Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   CO689_RS06815 Genome accession   NZ_CP023497
Coordinates   1256301..1257929 (+) Length   542 a.a.
NCBI ID   WP_061054988.1    Uniprot ID   A0AAE5HUS2
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251301..1262929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS06790 (CO689_06790) - 1252764..1253090 (-) 327 WP_000391495.1 metalloregulator ArsR/SmtB family transcription factor -
  CO689_RS06795 (CO689_06795) - 1253297..1253656 (+) 360 WP_001631039.1 hypothetical protein -
  CO689_RS14485 (CO689_06800) - 1253768..1254106 (-) 339 Protein_1150 recombinase family protein -
  CO689_RS06805 (CO689_06805) - 1254115..1254744 (+) 630 Protein_1151 hypothetical protein -
  CO689_RS06810 (CO689_06810) ccrA 1254931..1256265 (+) 1335 WP_061054989.1 cassette chromosome recombinase CcrA Machinery gene
  CO689_RS06815 (CO689_06815) ccrB 1256301..1257929 (+) 1629 WP_061054988.1 cassette chromosome recombinase CcrB Machinery gene
  CO689_RS06820 (CO689_06820) - 1258017..1258751 (+) 735 WP_061054987.1 glucose 1-dehydrogenase -
  CO689_RS06825 (CO689_06825) - 1258941..1260275 (-) 1335 WP_002479755.1 IS1182 family transposase -
  CO689_RS06830 (CO689_06830) - 1260912..1261262 (+) 351 WP_061054986.1 SAUGI family uracil-DNA glycosylase inhibitor -
  CO689_RS06835 (CO689_06835) - 1261349..1261660 (+) 312 WP_096754468.1 DUF960 family protein -
  CO689_RS06840 (CO689_06840) - 1261676..1262173 (+) 498 WP_061054984.1 DUF1643 domain-containing protein -
  CO689_RS06845 (CO689_06845) - 1262187..1262408 (+) 222 WP_061054983.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62820.63 Da        Isoelectric Point: 9.6699

>NTDB_id=247710 CO689_RS06815 WP_061054988.1 1256301..1257929(+) (ccrB) [Staphylococcus simulans strain FDAARGOS_383]
MQKLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCNFHHFEVKDIYDDRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILTNPFYIGKIQFAK
YKDWNEKRRKGLNDNPIIADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVLERVNQENKVDIGALNHDIAYKQQQYD
EIHAKLDNLIKTIEDNPDLTTILKETIHKYETQLNDITNQINQLKQQQNQEKTSYNTKQLSAVLRRIFQNVESMDKSQLK
ALYLTVIDRIDIRKDEHRKKQFYVTLKLNHEITKQLFHNTPIDEVRLSTSSLFLSQTLYIHI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=247710 CO689_RS06815 WP_061054988.1 1256301..1257929(+) (ccrB) [Staphylococcus simulans strain FDAARGOS_383]
ATGCAAAAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGACGATCGTGGTA
TATCAGGAAAGTCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTATATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTGAAAATAGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAACACTTCTTCGGGTAAACTCATGTTACAAATACTTGCAAGCTTTTCTG
AATTTGAAAGAAACAATATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCGAATATCGTCAAATA
TATCTTTGAGTCATATGCTAAAGGTCATGGTTATCGAAAAATGGCTAACGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTTAGTACATCAGCTATAGCTTATATCCTTACCAACCCCTTCTACATCGGTAAAATTCAATTTGCGAAG
TATAAAGACTGGAATGAGAAACGACGTAAAGGTCTTAATGACAATCCTATAATAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCCCAAGTTCATGGAAAAGGAACCA
ACCTATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGCAACAAGGGGTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAAGTCATTAACCAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAATCCATGCGAAACTAGACAACTTGATTAAAACAATCGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATGAAACACAACTGAATGACATTACGAATCAAATTAATCAACTGAAGCAACAACAAAATCAAGAGAAAACGT
CATATAATACGAAACAACTATCCGCTGTTTTACGTCGCATATTTCAAAACGTAGAATCCATGGATAAATCACAACTCAAA
GCGTTATATCTCACAGTCATTGACCGAATAGATATTCGTAAAGACGAACATCGTAAAAAGCAATTCTATGTCACATTAAA
ACTCAATCATGAAATCACTAAACAACTCTTCCATAATACCCCTATCGACGAAGTGCGCCTCAGCACTTCGTCTTTATTTT
TATCTCAAACACTCTATATTCATATATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.502

100

0.845

Multiple sequence alignment