Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   CO689_RS06810 Genome accession   NZ_CP023497
Coordinates   1254931..1256265 (+) Length   444 a.a.
NCBI ID   WP_061054989.1    Uniprot ID   A0AAE5HU10
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249931..1261265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS06780 (CO689_06780) - 1250509..1252434 (-) 1926 WP_002485723.1 heavy metal translocating P-type ATPase -
  CO689_RS06790 (CO689_06790) - 1252764..1253090 (-) 327 WP_000391495.1 metalloregulator ArsR/SmtB family transcription factor -
  CO689_RS06795 (CO689_06795) - 1253297..1253656 (+) 360 WP_001631039.1 hypothetical protein -
  CO689_RS14485 (CO689_06800) - 1253768..1254106 (-) 339 Protein_1150 recombinase family protein -
  CO689_RS06805 (CO689_06805) - 1254115..1254744 (+) 630 Protein_1151 hypothetical protein -
  CO689_RS06810 (CO689_06810) ccrA 1254931..1256265 (+) 1335 WP_061054989.1 cassette chromosome recombinase CcrA Machinery gene
  CO689_RS06815 (CO689_06815) ccrB 1256301..1257929 (+) 1629 WP_061054988.1 cassette chromosome recombinase CcrB Machinery gene
  CO689_RS06820 (CO689_06820) - 1258017..1258751 (+) 735 WP_061054987.1 glucose 1-dehydrogenase -
  CO689_RS06825 (CO689_06825) - 1258941..1260275 (-) 1335 WP_002479755.1 IS1182 family transposase -
  CO689_RS06830 (CO689_06830) - 1260912..1261262 (+) 351 WP_061054986.1 SAUGI family uracil-DNA glycosylase inhibitor -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 51705.63 Da        Isoelectric Point: 10.0410

>NTDB_id=247709 CO689_RS06810 WP_061054989.1 1254931..1256265(+) (ccrA) [Staphylococcus simulans strain FDAARGOS_383]
MKQAIGYLRQSTTKQQSLAAQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIERIQQRQCEVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKAKQGKLITTHAPFGYHYQ
NGTFIINNDESPTVKAVFNYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTSI
YEQAQAIRVNKQVKRTPSANLLKQKIKCPYCGSTLTNMAIRKTNHSLRYYVCPKNMNASRFICDFKGINAENLEKQVLES
CKKFFRDQQLYSKIKHAIEKQLKKQRMHDTSNTLTQKKLIENLAQGKIDVETFREQSQSINLQNKPIQAISDIRIKASLQ
KTIQKSFTLNMLYPYIDEIHITKNKELSGIYLKDEPLNIVNQAV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=247709 CO689_RS06810 WP_061054989.1 1254931..1256265(+) (ccrA) [Staphylococcus simulans strain FDAARGOS_383]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCGCCGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGCGATAAGCAATCAGGCAGAACGGATAATCGAACAGGTT
ATCAACAAGTCATCGAACGCATTCAACAAAGACAATGTGAAGTATTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAGGCAAAACAAGGTAAACTCATAACAACCCATGCGCCTTTCGGTTATCACTATCAA
AATGGTACTTTCATCATTAATAATGATGAATCACCTACCGTCAAAGCTGTATTCAATTATTATCTTCAAGGCTATGGTTA
TAAGAAAATCGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAGTATA
TACGAACAAGCTCAAGCAATACGAGTAAATAAACAAGTAAAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTATTGTGGTTCAACCCTTACCAATATGGCCATTAGAAAAACCAATCATTCATTACGTTATTATGTCTGCCCTA
AAAACATGAATGCATCACGTTTTATATGTGACTTTAAAGGCATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAATCT
TGCAAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACATGCTATTGAGAAACAGCTCAAAAAACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGAAAAAGCTTATTGAAAATTTAGCACAAGGAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGACTATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAATT
AAGCGGAATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTATAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(168-248)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.477

100

0.775
  ccrA Staphylococcus aureus N315

72.748

100

0.727

Multiple sequence alignment