Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FORC71_RS13435 Genome accession   NZ_CP023485
Coordinates   2673070..2673684 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_071     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2668070..2678684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC71_RS13410 (FORC71_2422) - 2668354..2669271 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  FORC71_RS13420 (FORC71_2423) - 2669524..2671194 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  FORC71_RS13425 (FORC71_2424) can 2671478..2672146 (+) 669 WP_005462578.1 carbonate dehydratase -
  FORC71_RS13430 (FORC71_2425) hpt 2672221..2672751 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  FORC71_RS13435 (FORC71_2426) opaR 2673070..2673684 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  FORC71_RS13440 (FORC71_2427) lpdA 2673812..2675239 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  FORC71_RS13445 (FORC71_2428) aceF 2675508..2677400 (-) 1893 WP_065779038.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=247620 FORC71_RS13435 WP_005479697.1 2673070..2673684(+) (opaR) [Vibrio parahaemolyticus strain FORC_071]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=247620 FORC71_RS13435 WP_005479697.1 2673070..2673684(+) (opaR) [Vibrio parahaemolyticus strain FORC_071]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment