Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   COP00_RS22465 Genome accession   NZ_CP023481
Coordinates   4278929..4282429 (+) Length   1166 a.a.
NCBI ID   WP_048406707.1    Uniprot ID   A0A0J6EK04
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4273929..4287429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS22440 (COP00_22440) - 4274602..4275972 (-) 1371 WP_046131295.1 sensor histidine kinase -
  COP00_RS22445 (COP00_22445) - 4275953..4276611 (-) 659 Protein_4413 response regulator transcription factor -
  COP00_RS22450 (COP00_22450) - 4276729..4277181 (-) 453 WP_046131323.1 ferritin-like domain-containing protein -
  COP00_RS22455 (COP00_22455) modA 4277364..4278155 (+) 792 WP_048355537.1 molybdate ABC transporter substrate-binding protein -
  COP00_RS22460 (COP00_22460) modB 4278164..4278820 (+) 657 WP_048355538.1 molybdate ABC transporter permease subunit -
  COP00_RS22465 (COP00_22465) addB 4278929..4282429 (+) 3501 WP_048406707.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  COP00_RS22470 (COP00_22470) addA 4282416..4286108 (+) 3693 WP_048356283.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  COP00_RS22475 (COP00_22475) sbcD 4286176..4287360 (+) 1185 WP_048356282.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 133999.83 Da        Isoelectric Point: 5.4498

>NTDB_id=247538 COP00_RS22465 WP_048406707.1 4278929..4282429(+) (addB) [Bacillus glycinifermentans strain KBN06P03352]
MGTVFLSGRSGSGKTTFILDDIREKLRHDPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRILQHTG
GMNRPFLTGTGIQMLLRKLIEEHKSEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPEGIREIMQGSGASEYEEERILSD
KLHDLYILYSKMEEALEHQYVQSEDYLTLLAEQIPHAEEIRDASIYVDGFHQFTPQEMRVLEQLMAHAREITFSLTVDEP
FAHHAPHDLHLFRMTGKAYFDLCQKARELGLDLSEIRMEGGERHSHAPELEHLERQFDERPAKPYAGTSESFCLMQAANR
RTEIEGIAREIHSLVHCGRFRLKDIAVIARNLEDYKDTIKEVFTDYELAFFIDGKESMQNHPLIELIRSTLDIIKSNWRY
EAVFRCIKTELLFPMDEPRERVRDQIDQLENYCIAYGIKGERWTSKDPFTYRRYASLDDDFAKTDREIETENMLNDLKGW
IVPPVHRLQKRLKKAGSVREMAEAVYLYLEEADVPMKLEQERRLAEESGRIAESRQHDQVWDAVIQLLDEFVEMMGDERI
SFSLFQQMVETGLESLTFSLIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLTDDDREWLRRNGVQLA
ATGREQLLDEHFLIYMALSSPSDKLYVSYPIADAEGKTLLPSTVVKRLNELFPDHGEKVLVNEPEQLGDEEQLEFLVNKS
TALSYLTGQLGIWARQYAISDVWWSTYNFLMGEPDRGFSKNILSSLFFRNKVHRLTERVSRDLYGENIQGSVSRMETYKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISNRLHELKLDWRDLTKEQCDTLSSDAVERLAPRLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGLELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITYSAEWLGMKASPAGVLYFHVHDPMIQASVPLSLDEIEKEIFKKFKMKGL
LLGDQEAIKLMDTALEQGRSDIISAGLKKDGSLRSDSDVVTEDDFHLLRRHVRRTFQKAGEEITDGKVSIEPYKLKDRTP
CTYCAFKSFCQFDESLEENEYRVLKPEKDNVILEWLKKEDEADGNG

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=247538 COP00_RS22465 WP_048406707.1 4278929..4282429(+) (addB) [Bacillus glycinifermentans strain KBN06P03352]
ATGGGAACAGTCTTTTTATCAGGCAGGTCCGGGAGTGGGAAAACGACCTTCATCTTGGATGACATCAGAGAAAAGCTTCG
CCATGACCCGCTCGGGAAACCGATCATTTTTCTAGTCCCGGATCAGATGACGTTTTTAATGGAATATGAGCTTAGTAAAA
CTCCCGATTTGGGCGGGACGATCCGCGCCCAGGTTTACAGTTTTTCAAGGCTTGCCTGGCGAATCCTCCAGCATACGGGA
GGGATGAATCGTCCGTTTCTGACGGGGACGGGCATTCAGATGCTGCTTCGCAAATTGATCGAAGAGCATAAGAGCGAGTT
TAAAGTTTACCAGAATGCAAGCGATAAAAGCGGATTTACGGAGCAGGTCGAACGGATGTTGACCGAGTTTAAACGGCACT
GCCTTCCGCCTGAGGGCATTCGCGAGATCATGCAGGGAAGCGGGGCATCGGAATATGAGGAGGAACGGATTCTTTCCGAC
AAGCTCCATGATCTCTACATTTTATACAGCAAGATGGAAGAAGCTCTCGAGCATCAATACGTTCAGTCCGAAGATTATTT
GACGCTTTTGGCAGAGCAGATTCCGCACGCCGAAGAGATCAGGGATGCTTCGATTTATGTGGACGGTTTTCATCAATTCA
CCCCGCAGGAGATGCGCGTTCTTGAACAGCTGATGGCGCATGCCCGGGAGATTACGTTTTCTTTGACAGTGGACGAGCCT
TTCGCCCATCATGCACCGCATGATCTGCATCTGTTCCGGATGACGGGAAAGGCGTATTTCGACCTTTGCCAAAAGGCGCG
GGAGCTCGGCCTCGACTTGTCAGAGATCCGCATGGAAGGGGGGGAACGGCACAGCCATGCCCCTGAGCTTGAACACTTGG
AACGGCAGTTTGATGAACGGCCGGCAAAACCGTATGCGGGAACATCGGAGTCTTTTTGCCTCATGCAGGCGGCAAACCGG
AGAACCGAAATCGAAGGGATCGCGAGAGAAATTCATTCCCTGGTGCATTGCGGCAGGTTCAGGCTGAAAGATATCGCGGT
CATCGCCCGCAATCTTGAAGATTATAAAGATACGATAAAAGAAGTGTTTACGGATTACGAACTTGCTTTTTTCATAGACG
GAAAAGAGTCCATGCAGAATCATCCGCTGATCGAACTGATCCGTTCAACCCTTGATATCATCAAAAGCAACTGGCGATAT
GAAGCGGTGTTCCGCTGCATCAAAACAGAGCTTTTATTCCCGATGGATGAGCCGAGGGAGCGGGTGCGGGATCAGATCGA
CCAGCTCGAAAACTACTGCATTGCCTATGGGATTAAAGGCGAGAGATGGACGAGCAAAGACCCGTTTACATACCGCAGAT
ACGCCTCATTGGATGATGACTTTGCCAAGACCGACCGGGAGATTGAGACAGAAAATATGCTCAATGACTTAAAGGGCTGG
ATCGTACCGCCCGTCCACCGGCTGCAAAAACGCTTGAAAAAAGCGGGATCAGTCAGGGAAATGGCTGAAGCCGTTTATCT
TTATCTGGAAGAAGCGGACGTTCCGATGAAGCTGGAACAGGAACGGCGGCTTGCCGAAGAAAGCGGCCGGATCGCGGAAT
CAAGACAGCATGACCAAGTATGGGATGCAGTCATTCAATTGTTGGACGAGTTTGTGGAAATGATGGGAGACGAGCGCATA
TCGTTTTCCTTGTTTCAGCAAATGGTCGAAACCGGTTTGGAGTCTTTAACATTCTCGCTGATTCCGCCTGCTCTTGATCA
AGTATTTATCGGGAATATGGATTTATCAAGAATGTACGGGACGAAATGCACGTTCCTCATCGGGGTGAACGACGGCATTC
TGCCGGCAAGGCCGGCAGATGACGGGGTTTTGACAGATGACGACAGAGAATGGCTGAGACGAAACGGTGTGCAGCTTGCA
GCAACGGGCAGAGAGCAGCTGCTTGACGAGCATTTTCTGATCTATATGGCGCTCTCCAGCCCGTCAGACAAGCTTTATGT
TTCGTATCCGATCGCGGATGCCGAAGGAAAGACGCTGCTTCCTTCAACCGTTGTGAAACGCTTGAACGAGCTGTTTCCAG
ATCACGGAGAAAAGGTGCTTGTCAATGAACCGGAACAGCTTGGCGATGAAGAACAGCTCGAATTTCTCGTCAATAAAAGC
ACGGCGTTAAGCTATTTGACAGGACAGCTTGGTATATGGGCGAGGCAGTATGCGATCAGTGACGTCTGGTGGAGCACATA
CAACTTTTTGATGGGTGAGCCGGACCGCGGCTTTTCGAAAAATATCCTGTCCAGCTTGTTTTTCCGGAACAAGGTGCACA
GGCTCACCGAGCGCGTGAGCCGGGATTTGTACGGAGAGAACATCCAGGGGAGCGTGTCGCGGATGGAGACGTATAAAGCC
TGTCCGTTCTCCCATTTTGCTTCCCACGGCTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCGCCTGATATCGG
TCAGCTGTTTCATTCCGCGCTGAAGCTGATTTCAAACCGCCTTCATGAACTGAAGCTTGATTGGCGGGATCTGACGAAGG
AGCAATGCGATACATTGTCGAGCGATGCCGTGGAGCGGCTTGCGCCAAGGCTGCAAAAAGAGATATTGCTCAGTTCGAAC
CGCCACCACTATGTCAAGCAAAAGCTGCAAAAAATCATTGCAAGGGTGTCCGGCATTTTAAGCGAGCATGCAAAAGCGAG
CGGTTTTGCCCCCGTCGGGCTGGAGCTCGGATTCGGCGGCAAAGGACCGCTTCCTCCGATGCGGTTCACCCTGAAGAACG
GGTGCACAATGGAGCTTGTCGGCCGGATTGACAGGGTCGATAAAGCCGAAAGCTCAAAAGGTCTGCTGCTTCGAATCGTC
GATTACAAATCGAGCGATAAAGGCCTCGATTTAGCCGAAGTGTACTACGGTCTTGCCCTGCAGATGCTGACATACCTCGA
TTTGTCGATCACGTATTCGGCCGAATGGCTCGGAATGAAGGCGTCGCCGGCCGGGGTTCTTTATTTTCACGTGCACGATC
CGATGATTCAGGCCTCTGTGCCGCTCAGCCTTGATGAGATCGAAAAGGAAATATTCAAGAAGTTTAAGATGAAAGGGCTC
CTGTTAGGGGACCAGGAAGCGATCAAGCTGATGGACACCGCCCTTGAACAGGGCAGGTCCGACATCATCAGCGCCGGCTT
GAAGAAGGACGGTTCTCTGCGTTCGGATTCGGATGTTGTCACAGAAGATGACTTTCATTTGTTAAGGCGCCACGTCCGCC
GGACGTTTCAAAAGGCCGGCGAGGAGATTACAGACGGCAAGGTGTCGATCGAGCCTTATAAATTAAAGGACAGAACCCCT
TGCACATACTGCGCTTTCAAATCATTCTGCCAGTTTGACGAATCGCTTGAAGAGAATGAATATCGCGTATTGAAGCCGGA
AAAAGACAATGTCATATTGGAATGGCTGAAAAAGGAGGATGAGGCAGATGGAAACGGCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6EK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

74.506

99.914

0.744

Multiple sequence alignment