Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   COP00_RS16540 Genome accession   NZ_CP023481
Coordinates   3126843..3128222 (+) Length   459 a.a.
NCBI ID   WP_048355825.1    Uniprot ID   A0A0J6ETY7
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3121843..3133222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS16520 (COP00_16520) - 3122210..3122674 (+) 465 WP_048355822.1 CtsR family transcriptional regulator -
  COP00_RS16525 (COP00_16525) - 3122689..3123246 (+) 558 WP_048355823.1 UvrB/UvrC motif-containing protein -
  COP00_RS16530 (COP00_16530) - 3123246..3124337 (+) 1092 WP_048355824.1 protein arginine kinase -
  COP00_RS16535 (COP00_16535) clpC 3124334..3126766 (+) 2433 WP_006640291.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  COP00_RS16540 (COP00_16540) radA 3126843..3128222 (+) 1380 WP_048355825.1 DNA repair protein RadA Machinery gene
  COP00_RS16545 (COP00_16545) disA 3128226..3129302 (+) 1077 WP_046128830.1 DNA integrity scanning diadenylate cyclase DisA -
  COP00_RS16550 (COP00_16550) - 3129422..3130510 (+) 1089 WP_048355826.1 PIN/TRAM domain-containing protein -
  COP00_RS16555 (COP00_16555) ispD 3130526..3131221 (+) 696 WP_048355827.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  COP00_RS16560 (COP00_16560) ispF 3131214..3131690 (+) 477 WP_048355828.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49730.05 Da        Isoelectric Point: 7.0808

>NTDB_id=247530 COP00_RS16540 WP_048355825.1 3126843..3128222(+) (radA) [Bacillus glycinifermentans strain KBN06P03352]
MAKTKTKFICQSCGYESAKWMGKCPGCGAWNTMVEETVKKPAANRRTAFAHSVQRVQKPSPISSIETTEEPRIKTKLGEF
NRVLGDGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADANENVLYISGEESVKQTKLRADRLGINNSTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPSPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPAANADGWTKPKGIEVVGVENVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=247530 COP00_RS16540 WP_048355825.1 3126843..3128222(+) (radA) [Bacillus glycinifermentans strain KBN06P03352]
ATGGCTAAAACAAAGACTAAATTTATCTGCCAATCGTGCGGTTATGAGTCCGCCAAGTGGATGGGAAAGTGCCCGGGATG
CGGCGCATGGAACACGATGGTGGAAGAAACGGTTAAAAAGCCGGCCGCCAACCGAAGAACCGCTTTTGCACATTCCGTTC
AAAGGGTTCAGAAACCGTCGCCCATCTCATCGATCGAAACGACGGAAGAGCCGCGAATCAAGACGAAACTGGGCGAATTC
AACCGTGTGTTGGGCGATGGAATCGTCAAGGGCTCGCTTGTCTTAATCGGAGGCGATCCCGGTATCGGAAAGTCGACATT
GCTGCTGCAGGTATCTGCCCAGCTTGCCGATGCCAATGAAAACGTCCTGTACATATCAGGAGAAGAATCTGTCAAACAAA
CAAAGCTGAGAGCGGACCGGCTTGGGATCAACAATTCAACTCTGCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCTTCATTTGTTGTGGTGGATTCGATTCAAACCGTTTATCAAAGCGACATTACCTCTGC
CCCGGGCAGCGTGTCCCAGGTAAGGGAGTGTACCGCGGAGCTGATGAGGATTGCCAAAACAAAAGGAATTCCGATTTTTA
TCGTCGGACACGTCACGAAAGAAGGATCGATTGCCGGACCGAGACTGCTTGAACATATGGTCGACACCGTCCTTTATTTT
GAAGGGGAGAGGCATCATACCTTCCGGATTTTACGAGCCGTCAAAAACCGGTTCGGTTCGACAAATGAAATGGGGATTTT
TGAGATGAGGGAAGAAGGCCTCACAGAGGTGCTGAACCCGTCGGAAATTTTTCTTGAAGAGCGTTCGGCGGGCGCAGCCG
GATCGAGCGTCGTAGCGTCAATGGAAGGGACGAGGCCGGTCCTCGTCGAAATTCAGGCGCTGATTTCGCCGACAAGCTTC
GGCAATCCCCGCAGGATGGCTACCGGGATCGATCATAACCGTGTGTCGCTATTGATGGCCGTGCTGGAAAAAAGGGTCGG
TCTGCTTCTTCAAAACCAGGATGCCTATTTAAAAGTTGCCGGCGGCGTGAAGCTCGACGAACCGGCGATAGACCTTGCCG
TTGCCGTGAGCATTGCGTCAAGCTTCCGGGATACCCCGCCGAGTCCGACCGATTGTTTTATAGGTGAGGTCGGGCTGACA
GGAGAGGTCCGCAGAGTATCGAGAATCGAACAGAGGGTTCAGGAAGCGGCCAAGCTCGGGTTCAAGAGAATGATCATCCC
TGCCGCAAATGCGGACGGATGGACAAAACCGAAAGGAATTGAGGTCGTCGGTGTTGAAAATGTAGCTGAGGCTCTTCGAA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6ETY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.266

99.782

0.911
  radA Streptococcus pneumoniae Rx1

62.472

98.693

0.617
  radA Streptococcus pneumoniae D39

62.472

98.693

0.617
  radA Streptococcus pneumoniae R6

62.472

98.693

0.617
  radA Streptococcus pneumoniae TIGR4

62.472

98.693

0.617
  radA Streptococcus mitis NCTC 12261

62.472

98.693

0.617
  radA Streptococcus mitis SK321

62.252

98.693

0.614

Multiple sequence alignment