Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | COP00_RS16535 | Genome accession | NZ_CP023481 |
| Coordinates | 3124334..3126766 (+) | Length | 810 a.a. |
| NCBI ID | WP_006640291.1 | Uniprot ID | - |
| Organism | Bacillus glycinifermentans strain KBN06P03352 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3119334..3131766
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COP00_RS16520 (COP00_16520) | - | 3122210..3122674 (+) | 465 | WP_048355822.1 | CtsR family transcriptional regulator | - |
| COP00_RS16525 (COP00_16525) | - | 3122689..3123246 (+) | 558 | WP_048355823.1 | UvrB/UvrC motif-containing protein | - |
| COP00_RS16530 (COP00_16530) | - | 3123246..3124337 (+) | 1092 | WP_048355824.1 | protein arginine kinase | - |
| COP00_RS16535 (COP00_16535) | clpC | 3124334..3126766 (+) | 2433 | WP_006640291.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| COP00_RS16540 (COP00_16540) | radA | 3126843..3128222 (+) | 1380 | WP_048355825.1 | DNA repair protein RadA | Machinery gene |
| COP00_RS16545 (COP00_16545) | disA | 3128226..3129302 (+) | 1077 | WP_046128830.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| COP00_RS16550 (COP00_16550) | - | 3129422..3130510 (+) | 1089 | WP_048355826.1 | PIN/TRAM domain-containing protein | - |
| COP00_RS16555 (COP00_16555) | ispD | 3130526..3131221 (+) | 696 | WP_048355827.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| COP00_RS16560 (COP00_16560) | ispF | 3131214..3131690 (+) | 477 | WP_048355828.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90141.72 Da Isoelectric Point: 5.9765
>NTDB_id=247529 COP00_RS16535 WP_006640291.1 3124334..3126766(+) (clpC) [Bacillus glycinifermentans strain KBN06P03352]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQKEVESLIGRGQEMSQSIHY
TPRAKKVTELAMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGGASGANSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELRRNKYVGFNVQDETQNYKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLK
DIVSLMSDQLTKRLKEQDLSIELTEAAKEKIAEEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNITKGQHIVLDVENGE
FVVKTEAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLSPDKIQKEVESLIGRGQEMSQSIHY
TPRAKKVTELAMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESGGGASGANSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSPEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEETKKTWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELRRNKYVGFNVQDETQNYKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLK
DIVSLMSDQLTKRLKEQDLSIELTEAAKEKIAEEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNITKGQHIVLDVENGE
FVVKTEAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=247529 COP00_RS16535 WP_006640291.1 3124334..3126766(+) (clpC) [Bacillus glycinifermentans strain KBN06P03352]
ATGATGTTTGGAAGATTCACAGAAAGAGCACAAAAAGTATTGGCGCTTGCCCAAGAAGAGGCTCTGCGTCTCGGGCACAA
TAATATTGGAACTGAGCATATCCTGCTGGGACTTGTCCGCGAGGGAGAAGGGATTGCTGCAAAGGCGCTGCAGGCGCTGG
GACTCAGCCCCGATAAAATACAAAAAGAGGTCGAAAGCCTGATCGGCCGCGGACAGGAAATGTCCCAGTCCATTCACTAT
ACACCGAGGGCAAAAAAAGTGACGGAACTTGCGATGGATGAAGCGAGGAAGCTCGGGCATTCATATGTCGGAACCGAGCA
CATCCTCCTGGGATTAATTCGTGAAGGCGAAGGCGTCGCTGCCAGAGTGCTGAACAATTTGGGCGTCAGCTTGAATAAAG
CAAGACAACAGGTGCTGCAGCTGTTGGGCAGCAATGAGAGCGGAGGCGGTGCGTCCGGGGCAAATAGCAATGCCAACACA
CCTACCTTGGACAGCCTCGCCCGCGATTTGACCGCGATTGCGAAAGAGGACAGCCTCGATCCGGTCATCGGGCGCAGCAA
AGAAATTCAGCGCGTCATCGAAGTACTGAGCCGCAGAACGAAAAACAATCCTGTGTTAATCGGGGAGCCCGGCGTCGGTA
AGACAGCGATAGCTGAAGGCTTAGCCCAGCAGATTATCAATAATGAAGTACCTGAAATTTTACGCGACAAGCGGGTGATG
ACGCTTGATATGGGAACTGTTGTTGCAGGTACAAAATACCGCGGGGAATTTGAAGACCGCCTTAAAAAAGTAATGGACGA
AATCCGTCAGGCAGGAAACATCATCCTGTTTATCGATGAACTTCATACATTAATTGGTGCAGGCGGCGCTGAAGGCGCAA
TTGACGCCTCCAATATCCTGAAGCCTTCCCTGGCGCGCGGAGAATTGCAATGCATCGGGGCTACAACACTTGACGAATAT
CGTAAATACATTGAAAAAGACGCTGCGCTTGAACGGCGCTTTCAGCCGATTCAGGTAGACCAGCCGTCACCTGAGGAAAG
CATTCAGATTTTGAAAGGGCTGCGTGACCGTTATGAAGCACATCACCGCGTCTCTATCACTGACGAAGCGATCGAAGCCG
CTGTTAAACTGTCAGACCGGTATATTTCCGACCGCTTCCTGCCTGACAAAGCGATCGATTTAATCGATGAGGCCGGTTCA
AAGGTTCGCCTGCGTTCATTTACAACGCCTCCTAACCTGAAAGAGCTTGAACAAAAGCTCGATGAAGTCCGTAAAGAAAA
AGATGCCGCAGTTCAAAGCCAGGAATTTGAAAAAGCAGCGTCATTGCGTGATACGGAGCAGCGTTTGCGGGAACAGGTAG
AAGAAACGAAGAAAACGTGGAAAGAAAAGCAGGGGCAAGAAAACTCCGAAGTGACGGTTGACGATATTGCGATGGTTGTA
TCAAGCTGGACCGGAGTGCCTGTGTCAAAAATCGCTCAGACTGAAACAGATAAGCTGCTGAATATGGAAAGCATTCTTCA
TTCGCGGGTTATCGGTCAGGATGAAGCGGTAGTCGCCGTTGCGAAAGCAGTAAGACGTGCGCGCGCCGGACTGAAAGATC
CGAAACGTCCGATCGGCTCGTTTATTTTCCTCGGACCGACCGGCGTCGGCAAAACAGAGCTTGCCCGCGCGCTTGCGGAA
TCGATTTTCGGTGATGAAGAAGCGATGATCCGCATCGATATGTCAGAGTATATGGAGAAGCATTCGACATCAAGACTCGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAGGGCGGACAGCTTACTGAAAAGGTGAGAAGAAAACCTTATTCAGTCG
TCCTGCTCGATGAGATTGAAAAAGCCCACCCTGACGTCTTCAATATTCTGCTGCAAGTGCTTGAAGACGGCCGTTTGACC
GATTCAAAAGGACGCACTGTTGACTTTAGAAATACGATCCTGATTATGACGTCAAACGTCGGCGCAAGCGAGCTGAGAAG
AAATAAATACGTCGGGTTTAACGTACAGGACGAAACGCAGAATTACAAAGATATGAAAGACAAAGTGATGGGCGAATTAA
AACGCGCCTTCAGACCGGAGTTCATCAACCGGATTGATGAAATTATCGTTTTCCACTCACTGGAGAAAAAACATTTGAAA
GACATCGTCTCCCTCATGTCAGACCAATTGACAAAGCGTCTGAAAGAACAGGACCTTTCCATTGAATTGACAGAGGCGGC
AAAAGAAAAAATCGCCGAAGAAGGCGTTGACCTTGAATACGGAGCCCGTCCGCTCAGAAGAGCCATCCAGAAACACGTCG
AAGACCGGCTGTCTGAAGAGCTCTTGAAGGGCAATATTACAAAAGGACAGCATATCGTGCTCGATGTAGAAAACGGAGAG
TTTGTCGTAAAAACAGAAGCTAAAACGAACTAA
ATGATGTTTGGAAGATTCACAGAAAGAGCACAAAAAGTATTGGCGCTTGCCCAAGAAGAGGCTCTGCGTCTCGGGCACAA
TAATATTGGAACTGAGCATATCCTGCTGGGACTTGTCCGCGAGGGAGAAGGGATTGCTGCAAAGGCGCTGCAGGCGCTGG
GACTCAGCCCCGATAAAATACAAAAAGAGGTCGAAAGCCTGATCGGCCGCGGACAGGAAATGTCCCAGTCCATTCACTAT
ACACCGAGGGCAAAAAAAGTGACGGAACTTGCGATGGATGAAGCGAGGAAGCTCGGGCATTCATATGTCGGAACCGAGCA
CATCCTCCTGGGATTAATTCGTGAAGGCGAAGGCGTCGCTGCCAGAGTGCTGAACAATTTGGGCGTCAGCTTGAATAAAG
CAAGACAACAGGTGCTGCAGCTGTTGGGCAGCAATGAGAGCGGAGGCGGTGCGTCCGGGGCAAATAGCAATGCCAACACA
CCTACCTTGGACAGCCTCGCCCGCGATTTGACCGCGATTGCGAAAGAGGACAGCCTCGATCCGGTCATCGGGCGCAGCAA
AGAAATTCAGCGCGTCATCGAAGTACTGAGCCGCAGAACGAAAAACAATCCTGTGTTAATCGGGGAGCCCGGCGTCGGTA
AGACAGCGATAGCTGAAGGCTTAGCCCAGCAGATTATCAATAATGAAGTACCTGAAATTTTACGCGACAAGCGGGTGATG
ACGCTTGATATGGGAACTGTTGTTGCAGGTACAAAATACCGCGGGGAATTTGAAGACCGCCTTAAAAAAGTAATGGACGA
AATCCGTCAGGCAGGAAACATCATCCTGTTTATCGATGAACTTCATACATTAATTGGTGCAGGCGGCGCTGAAGGCGCAA
TTGACGCCTCCAATATCCTGAAGCCTTCCCTGGCGCGCGGAGAATTGCAATGCATCGGGGCTACAACACTTGACGAATAT
CGTAAATACATTGAAAAAGACGCTGCGCTTGAACGGCGCTTTCAGCCGATTCAGGTAGACCAGCCGTCACCTGAGGAAAG
CATTCAGATTTTGAAAGGGCTGCGTGACCGTTATGAAGCACATCACCGCGTCTCTATCACTGACGAAGCGATCGAAGCCG
CTGTTAAACTGTCAGACCGGTATATTTCCGACCGCTTCCTGCCTGACAAAGCGATCGATTTAATCGATGAGGCCGGTTCA
AAGGTTCGCCTGCGTTCATTTACAACGCCTCCTAACCTGAAAGAGCTTGAACAAAAGCTCGATGAAGTCCGTAAAGAAAA
AGATGCCGCAGTTCAAAGCCAGGAATTTGAAAAAGCAGCGTCATTGCGTGATACGGAGCAGCGTTTGCGGGAACAGGTAG
AAGAAACGAAGAAAACGTGGAAAGAAAAGCAGGGGCAAGAAAACTCCGAAGTGACGGTTGACGATATTGCGATGGTTGTA
TCAAGCTGGACCGGAGTGCCTGTGTCAAAAATCGCTCAGACTGAAACAGATAAGCTGCTGAATATGGAAAGCATTCTTCA
TTCGCGGGTTATCGGTCAGGATGAAGCGGTAGTCGCCGTTGCGAAAGCAGTAAGACGTGCGCGCGCCGGACTGAAAGATC
CGAAACGTCCGATCGGCTCGTTTATTTTCCTCGGACCGACCGGCGTCGGCAAAACAGAGCTTGCCCGCGCGCTTGCGGAA
TCGATTTTCGGTGATGAAGAAGCGATGATCCGCATCGATATGTCAGAGTATATGGAGAAGCATTCGACATCAAGACTCGT
CGGTTCTCCTCCGGGATATGTCGGCTATGATGAGGGCGGACAGCTTACTGAAAAGGTGAGAAGAAAACCTTATTCAGTCG
TCCTGCTCGATGAGATTGAAAAAGCCCACCCTGACGTCTTCAATATTCTGCTGCAAGTGCTTGAAGACGGCCGTTTGACC
GATTCAAAAGGACGCACTGTTGACTTTAGAAATACGATCCTGATTATGACGTCAAACGTCGGCGCAAGCGAGCTGAGAAG
AAATAAATACGTCGGGTTTAACGTACAGGACGAAACGCAGAATTACAAAGATATGAAAGACAAAGTGATGGGCGAATTAA
AACGCGCCTTCAGACCGGAGTTCATCAACCGGATTGATGAAATTATCGTTTTCCACTCACTGGAGAAAAAACATTTGAAA
GACATCGTCTCCCTCATGTCAGACCAATTGACAAAGCGTCTGAAAGAACAGGACCTTTCCATTGAATTGACAGAGGCGGC
AAAAGAAAAAATCGCCGAAGAAGGCGTTGACCTTGAATACGGAGCCCGTCCGCTCAGAAGAGCCATCCAGAAACACGTCG
AAGACCGGCTGTCTGAAGAGCTCTTGAAGGGCAATATTACAAAAGGACAGCATATCGTGCTCGATGTAGAAAACGGAGAG
TTTGTCGTAAAAACAGAAGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.296 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.124 |
99.506 |
0.499 |
| clpC | Streptococcus thermophilus LMG 18311 |
47.087 |
100 |
0.479 |
| clpC | Streptococcus thermophilus LMD-9 |
46.966 |
100 |
0.478 |
| clpC | Streptococcus pneumoniae Rx1 |
45.488 |
99.877 |
0.454 |
| clpC | Streptococcus pneumoniae D39 |
45.488 |
99.877 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.365 |
99.877 |
0.453 |
| clpC | Streptococcus mutans UA159 |
43.728 |
100 |
0.452 |
| clpE | Streptococcus mutans UA159 |
53.467 |
80.123 |
0.428 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.276 |
78.642 |
0.411 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae Rx1 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae D39 |
53.291 |
76.914 |
0.41 |
| clpE | Streptococcus pneumoniae R6 |
53.291 |
76.914 |
0.41 |