Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   COP00_RS16205 Genome accession   NZ_CP023481
Coordinates   3065499..3065792 (-) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3060499..3070792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS16165 (COP00_16165) - 3060507..3060836 (+) 330 WP_046131743.1 cyclic-di-AMP receptor -
  COP00_RS16170 (COP00_16170) - 3060848..3061288 (+) 441 WP_048355904.1 YaaR family protein -
  COP00_RS16175 (COP00_16175) holB 3061300..3062289 (+) 990 WP_048355903.1 DNA polymerase III subunit delta' -
  COP00_RS16180 (COP00_16180) - 3062292..3063119 (+) 828 WP_048355902.1 stage 0 sporulation family protein -
  COP00_RS16185 (COP00_16185) yabA 3063134..3063496 (+) 363 WP_046131739.1 DNA replication initiation control protein YabA -
  COP00_RS16190 (COP00_16190) - 3063579..3064322 (+) 744 WP_048355901.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  COP00_RS16195 (COP00_16195) - 3064309..3064602 (+) 294 WP_048355900.1 GIY-YIG nuclease family protein -
  COP00_RS16200 (COP00_16200) rsmI 3064577..3065452 (+) 876 WP_096892196.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  COP00_RS16205 (COP00_16205) abrB 3065499..3065792 (-) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  COP00_RS16210 (COP00_16210) metG 3066298..3068286 (+) 1989 WP_057957502.1 methionine--tRNA ligase -
  COP00_RS16215 (COP00_16215) - 3068376..3069143 (+) 768 WP_048355898.1 TatD family hydrolase -
  COP00_RS16220 (COP00_16220) - 3069388..3070587 (+) 1200 WP_048355897.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=247528 COP00_RS16205 WP_087962552.1 3065499..3065792(-) (abrB) [Bacillus glycinifermentans strain KBN06P03352]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=247528 COP00_RS16205 WP_087962552.1 3065499..3065792(-) (abrB) [Bacillus glycinifermentans strain KBN06P03352]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGACGAACTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
TCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGCGAAGTTTCTGATGACAACCTTAAACTTGCCGGCGGTAAACTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATCAACGAAATTCAAGCACAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938

Multiple sequence alignment