Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   COP00_RS10490 Genome accession   NZ_CP023481
Coordinates   1947821..1948459 (-) Length   212 a.a.
NCBI ID   WP_046131689.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942821..1953459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS10455 (COP00_10455) - 1944001..1944432 (+) 432 WP_048353787.1 Na(+)/H(+) antiporter subunit B -
  COP00_RS10460 (COP00_10460) - 1944432..1944773 (+) 342 WP_046131683.1 Na(+)/H(+) antiporter subunit C -
  COP00_RS10465 (COP00_10465) - 1944766..1946244 (+) 1479 WP_048353786.1 Na+/H+ antiporter subunit D -
  COP00_RS10470 (COP00_10470) - 1946250..1946726 (+) 477 WP_048353785.1 Na+/H+ antiporter subunit E -
  COP00_RS10475 (COP00_10475) - 1946726..1947010 (+) 285 WP_048353784.1 Na(+)/H(+) antiporter subunit F1 -
  COP00_RS10480 (COP00_10480) mnhG 1946994..1947368 (+) 375 WP_048353783.1 monovalent cation/H(+) antiporter subunit G -
  COP00_RS10485 (COP00_10485) - 1947409..1947801 (-) 393 WP_048353782.1 hotdog fold thioesterase -
  COP00_RS10490 (COP00_10490) comA 1947821..1948459 (-) 639 WP_046131689.1 response regulator transcription factor Regulator
  COP00_RS10495 (COP00_10495) comP 1948542..1950845 (-) 2304 WP_057957515.1 ATP-binding protein Regulator
  COP00_RS10500 (COP00_10500) comX 1950859..1951029 (-) 171 WP_048353781.1 competence pheromone ComX -
  COP00_RS10505 (COP00_10505) - 1951032..1951913 (-) 882 WP_048406751.1 polyprenyl synthetase family protein -
  COP00_RS10510 (COP00_10510) degQ 1952104..1952244 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  COP00_RS10515 (COP00_10515) - 1952734..1953081 (+) 348 WP_232517706.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24140.51 Da        Isoelectric Point: 4.6583

>NTDB_id=247508 COP00_RS10490 WP_046131689.1 1947821..1948459(-) (comA) [Bacillus glycinifermentans strain KBN06P03352]
MRRLLVIDDHPAVMEGTKAILETNQDFLVDCLSPEASEQFLTKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYLKDLITKQKTKSSSQETQHDVLTERERLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFNKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=247508 COP00_RS10490 WP_046131689.1 1947821..1948459(-) (comA) [Bacillus glycinifermentans strain KBN06P03352]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACAAAGGCAATTCTTGAAACGAATCAGGATTT
TCTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTGACTAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTGAATCTGGGCGAAATCAACGGAATGGACCTCTCCAAGAAAATCCTTGAGACCTGTTCATCATGCAAAATTATC
GTTTATACCGGATACGAAGTAGAGGATTATTTTGAAGAAGCGATTCGTTCCGGTATGCATGGTGCGATCAGCAAAACAGA
GTCAAAGGAAAAGATTATTGAGTACATATATCAAGTGTTGGATAATAAAATCGTCGTCGATTATGATTACTTAAAAGATC
TGATCACTAAGCAAAAAACAAAATCAAGCAGCCAAGAGACCCAGCACGACGTATTGACCGAAAGAGAACGCTTGATCTTA
AAAGAGGTCGAAAAAGGCTATACGAATCAGGAGATTGCCGATGCGCTGCATCTGAGCAAACGTTCGATCGAATACAGCCT
GACTTCCGTATTTAACAAACTGAATGTCGGCTCACGGACGGAAGCTGTATTGATCGCAAAATCCGAAGGCGTACTTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-206)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

75.701

100

0.764

Multiple sequence alignment