Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | COP00_RS06750 | Genome accession | NZ_CP023481 |
| Coordinates | 1265437..1265772 (+) | Length | 111 a.a. |
| NCBI ID | WP_096891855.1 | Uniprot ID | - |
| Organism | Bacillus glycinifermentans strain KBN06P03352 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1260437..1270772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COP00_RS06730 (COP00_06730) | gcvT | 1260901..1261995 (-) | 1095 | WP_048356323.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| COP00_RS06735 (COP00_06735) | - | 1262576..1264243 (+) | 1668 | WP_057957444.1 | DEAD/DEAH box helicase | - |
| COP00_RS06740 (COP00_06740) | - | 1264247..1265041 (+) | 795 | WP_048356322.1 | YqhG family protein | - |
| COP00_RS06745 (COP00_06745) | sinI | 1265227..1265403 (+) | 177 | WP_046129962.1 | anti-repressor SinI | Regulator |
| COP00_RS06750 (COP00_06750) | sinR | 1265437..1265772 (+) | 336 | WP_096891855.1 | transcriptional regulator SinR | Regulator |
| COP00_RS06755 (COP00_06755) | tasA | 1265876..1266670 (-) | 795 | WP_048356541.1 | biofilm matrix protein TasA | - |
| COP00_RS06760 (COP00_06760) | sipW | 1266739..1267320 (-) | 582 | WP_046129965.1 | signal peptidase I SipW | - |
| COP00_RS06765 (COP00_06765) | tapA | 1267317..1268042 (-) | 726 | WP_046129966.1 | amyloid fiber anchoring/assembly protein TapA | - |
| COP00_RS06770 (COP00_06770) | - | 1268305..1268628 (+) | 324 | WP_046129967.1 | DUF3889 domain-containing protein | - |
| COP00_RS06775 (COP00_06775) | - | 1268713..1268895 (-) | 183 | WP_048356540.1 | YqzE family protein | - |
| COP00_RS06780 (COP00_06780) | comGG | 1268977..1269342 (-) | 366 | WP_048356539.1 | competence type IV pilus minor pilin ComGG | - |
| COP00_RS06785 (COP00_06785) | comGF | 1269354..1269839 (-) | 486 | WP_082634619.1 | competence type IV pilus minor pilin ComGF | - |
| COP00_RS06790 (COP00_06790) | comGE | 1269754..1270101 (-) | 348 | WP_048356538.1 | competence type IV pilus minor pilin ComGE | - |
| COP00_RS06795 (COP00_06795) | comGD | 1270085..1270528 (-) | 444 | WP_046129971.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12894.48 Da Isoelectric Point: 5.2973
>NTDB_id=247492 COP00_RS06750 WP_096891855.1 1265437..1265772(+) (sinR) [Bacillus glycinifermentans strain KBN06P03352]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKSQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKSQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=247492 COP00_RS06750 WP_096891855.1 1265437..1265772(+) (sinR) [Bacillus glycinifermentans strain KBN06P03352]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAATTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCGATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTACCAAAAATGGAAGAAGAG
TCAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAATTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTTGATGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCGATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTACCAAAAATGGAAGAAGAG
TCAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |