Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   COP00_RS06565 Genome accession   NZ_CP023481
Coordinates   1233099..1234829 (-) Length   576 a.a.
NCBI ID   WP_048353338.1    Uniprot ID   A0A0T6BTU6
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1228099..1239829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS06540 (COP00_06540) - 1228225..1229139 (+) 915 WP_048353341.1 class I SAM-dependent methyltransferase -
  COP00_RS06545 (COP00_06545) - 1229280..1229738 (+) 459 WP_156183661.1 hypothetical protein -
  COP00_RS06550 (COP00_06550) - 1229890..1230192 (-) 303 WP_057957440.1 LCI fold-containing protein -
  COP00_RS06555 (COP00_06555) spo0A 1230522..1231322 (-) 801 WP_048353339.1 sporulation transcription factor Spo0A Regulator
  COP00_RS06560 (COP00_06560) spoIVB 1231611..1232927 (-) 1317 WP_048353350.1 SpoIVB peptidase -
  COP00_RS06565 (COP00_06565) recN 1233099..1234829 (-) 1731 WP_048353338.1 DNA repair protein RecN Machinery gene
  COP00_RS06570 (COP00_06570) ahrC 1234860..1235309 (-) 450 WP_046131874.1 transcriptional regulator AhrC/ArgR -
  COP00_RS06575 (COP00_06575) - 1235416..1236261 (-) 846 WP_048353337.1 TlyA family RNA methyltransferase -
  COP00_RS06580 (COP00_06580) dxs 1236258..1238159 (-) 1902 WP_048353349.1 1-deoxy-D-xylulose-5-phosphate synthase -
  COP00_RS06585 (COP00_06585) - 1238424..1239314 (-) 891 WP_048353336.1 polyprenyl synthetase family protein -
  COP00_RS06590 (COP00_06590) - 1239304..1239564 (-) 261 WP_048353335.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64559.48 Da        Isoelectric Point: 4.7745

>NTDB_id=247490 COP00_RS06565 WP_048353338.1 1233099..1234829(-) (recN) [Bacillus glycinifermentans strain KBN06P03352]
MLTELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEKRAELEGLFLLDEGHPVFDMC
RELGIEASDGMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLELLDRYAGDEIEKALK
AYQEVYARYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYTLEDSTFQIRNMLDELEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKVEEEIDRIQNRDSHLQALKEELESVGQDVAIEAMNVSEIRKAWAKKLAKDIHRELKELYMEKSTFDTEFEI
KTADAREVAPVVNGTPVHLTKQGVDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLIMKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLQQAELVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=247490 COP00_RS06565 WP_048353338.1 1233099..1234829(-) (recN) [Bacillus glycinifermentans strain KBN06P03352]
TTGTTAACTGAATTATCGATCAAGAACTTTGCGATTATCGAAGAACTAACGATTTCTTTTGAAAAAGGACTGACGGTTTT
GACCGGTGAAACCGGCGCCGGAAAATCAATCATCATCGATGCGATTTCGCTGCTCGTCGGAGGCAGAGGATCATCAGAAT
TTGTCAGATACGGAGAAAAACGAGCGGAATTGGAAGGGCTCTTTCTGCTGGACGAGGGACATCCGGTTTTTGATATGTGC
AGAGAGCTCGGCATCGAAGCATCAGACGGCATGATCGTGATGAGGCGTGATATCAACGCCAACGGCAAGAGCATCTGCCG
TGTCAACGGAAAGCTCGTAACGATCGCCGCTCTGCGGGAAGTCGGCAGGCTTTTACTCGACATCCACGGTCAGCACGATA
ACCAGCTTTTGATGGAAGACGATCATCACCTTGAGCTTTTGGACCGGTATGCCGGAGATGAAATCGAAAAAGCGCTGAAA
GCATATCAGGAAGTGTACGCCCGCTATATGAACGTCATGAAAAAAGTCAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
TCACAGACTCGACTTGATCCAATTTCAGCTTGACGAAATCGAATCTGCAAATCTCGAGCCGAAAGAGGACGAGCTTTTAG
AAGAAGAGCGCCGGCAGATTTCCAACTTTGAGAAAATATACGAAGCTTTGCAAAATGCCTACAATGCGCTTCGCAATGAG
CAGGCGGGCCTAGATTGGGTCGGCATGGCTTCAAGCGAGCTCGAAAATGTGTCAGGCATCAATGACGGACTGAAGAAAAT
ATCCGAATCCGTCGCAAACGCCTACTACACGCTGGAAGACTCGACGTTTCAAATCAGAAACATGCTCGACGAATTGGAAT
ACGACCCTGCACGCCTCGACTTCATTGAATCCCGCCTGAACGAAATAAAACAGCTGAAGCGGAAATACGGCGCCACAGTG
GAAGATATTCAAGCCTATTCGGCTAAAGTCGAAGAAGAAATCGACCGCATTCAAAACCGGGACAGCCACTTGCAGGCTTT
AAAAGAGGAGCTTGAGTCGGTCGGCCAGGATGTCGCGATCGAAGCGATGAATGTGTCAGAGATCAGAAAAGCATGGGCGA
AAAAACTCGCCAAAGATATTCACCGCGAACTAAAAGAGCTGTACATGGAAAAATCAACGTTCGATACCGAATTTGAGATC
AAAACAGCCGATGCCCGAGAAGTCGCGCCTGTTGTCAACGGAACGCCCGTTCACCTGACAAAGCAAGGCGTTGACACCGT
CCGCTTTTTGATTTCCACCAATACGGGAGAACCGCTGAAATCGTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGGA
TTATGCTGGCGATGAAAAGCATTTTTTCCGCACAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGATACTGGTGTA
AGCGGAAGGGTGGCGCAGGCGATCGCCGAGAAAATCCACCGCGTATCGATCGGCTCCCAGGTGCTGTGCATCACCCATTT
GCCGCAAGTCGCCGCAATGGCGGACACGCACCTTTTGATTATGAAGCAGTCCAAAGACGGGAGAACGACGACAAGCGTTA
CCCCTTTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATCGCCGGCGTCGAAGTTACCGATCTGACGAAACGC
CACGCAAAAGAGCTTTTGCAGCAGGCCGAACTCGTCAAAACGACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BTU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

80.556

100

0.806

Multiple sequence alignment