Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   COP00_RS06555 Genome accession   NZ_CP023481
Coordinates   1230522..1231322 (-) Length   266 a.a.
NCBI ID   WP_048353339.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225522..1236322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS06530 (COP00_06530) - 1226887..1227120 (+) 234 Protein_1316 DUF2627 domain-containing protein -
  COP00_RS06535 (COP00_06535) - 1227170..1227898 (-) 729 WP_048353342.1 glycerophosphodiester phosphodiesterase -
  COP00_RS06540 (COP00_06540) - 1228225..1229139 (+) 915 WP_048353341.1 class I SAM-dependent methyltransferase -
  COP00_RS06545 (COP00_06545) - 1229280..1229738 (+) 459 WP_156183661.1 hypothetical protein -
  COP00_RS06550 (COP00_06550) - 1229890..1230192 (-) 303 WP_057957440.1 LCI fold-containing protein -
  COP00_RS06555 (COP00_06555) spo0A 1230522..1231322 (-) 801 WP_048353339.1 sporulation transcription factor Spo0A Regulator
  COP00_RS06560 (COP00_06560) spoIVB 1231611..1232927 (-) 1317 WP_048353350.1 SpoIVB peptidase -
  COP00_RS06565 (COP00_06565) recN 1233099..1234829 (-) 1731 WP_048353338.1 DNA repair protein RecN Machinery gene
  COP00_RS06570 (COP00_06570) ahrC 1234860..1235309 (-) 450 WP_046131874.1 transcriptional regulator AhrC/ArgR -
  COP00_RS06575 (COP00_06575) - 1235416..1236261 (-) 846 WP_048353337.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29584.14 Da        Isoelectric Point: 6.6109

>NTDB_id=247489 COP00_RS06555 WP_048353339.1 1230522..1231322(-) (spo0A) [Bacillus glycinifermentans strain KBN06P03352]
MEKIKVCVADDNRELVGLLSEYIEGQNDMEVIGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQMTHRAPSVQSSVLRPQPESPKKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=247489 COP00_RS06555 WP_048353339.1 1230522..1231322(-) (spo0A) [Bacillus glycinifermentans strain KBN06P03352]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGTGAATATATCGAGGGTCAAAA
CGACATGGAAGTGATCGGCGTGGCATATAACGGACAGGAATGTCTTTCTCTGTTTAAAGACAAGGAGCCTGACGTACTCG
TACTGGACATTATCATGCCTCATCTCGACGGATTGGCCGTTTTGGAAAGGCTGCGGGAATCTCAGCTTAAAAAACAGCCG
AACGTCATCATGCTGACTGCTTTCGGTCAGGAAGACGTAACGAAAAAAGCCGTGGATTTAGGCGCATCGTACTTCATTCT
GAAGCCGTTTGATATGGAGAATCTCGTCGGCCATATCCGCCAAGTCAGCGGAAACGGTTCTCAAATGACACACCGCGCCC
CTTCGGTTCAAAGCAGCGTCCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGAGCATCATC
CACGAAATCGGCGTTCCCGCCCATATTAAAGGGTACTTATACTTAAGAGAAGCCATCTCCATGGTGTATAACGATATTGA
ACTGCTCGGCAGCATTACGAAAGTGCTGTATCCGGACATCGCCAAAAAATTCAACACGACCGCAAGCCGGGTCGAACGGG
CGATCCGCCATGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGATTCCATCTCTTCTCTGTTCGGCTACACCGTCAGC
ATGTCAAAAGCAAAGCCGACGAACAGCGAGTTCATCGCGATGGTCGCAGATAAGCTGAGGTTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.884

100

0.932

Multiple sequence alignment