Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   COP00_RS05465 Genome accession   NZ_CP023481
Coordinates   1034339..1034935 (+) Length   198 a.a.
NCBI ID   WP_048356450.1    Uniprot ID   A0A0J6DT11
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029339..1039935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS05425 (COP00_05425) - 1030364..1030870 (-) 507 WP_048356454.1 PTS glucose transporter subunit IIA -
  COP00_RS05430 (COP00_05430) - 1031030..1031446 (+) 417 WP_048356453.1 Hsp20/alpha crystallin family protein -
  COP00_RS05435 (COP00_05435) - 1031469..1031921 (-) 453 WP_048356452.1 YppG family protein -
  COP00_RS05440 (COP00_05440) - 1032105..1032305 (+) 201 WP_046130805.1 YppF family protein -
  COP00_RS05445 (COP00_05445) - 1032324..1032698 (-) 375 WP_232517691.1 YppE family protein -
  COP00_RS05450 (COP00_05450) - 1032762..1032989 (-) 228 WP_048356451.1 DUF5446 family protein -
  COP00_RS05455 (COP00_05455) sspM 1033190..1033294 (+) 105 WP_046130808.1 acid-soluble spore protein SspM -
  COP00_RS05460 (COP00_05460) - 1033324..1034286 (-) 963 WP_082634614.1 DUF2515 domain-containing protein -
  COP00_RS05465 (COP00_05465) recU 1034339..1034935 (+) 597 WP_048356450.1 Holliday junction resolvase RecU Machinery gene
  COP00_RS05470 (COP00_05470) - 1034993..1037650 (+) 2658 WP_057957428.1 PBP1A family penicillin-binding protein -
  COP00_RS05475 (COP00_05475) - 1037683..1038171 (-) 489 WP_048356449.1 YpoC family protein -
  COP00_RS05480 (COP00_05480) nth 1038168..1038830 (-) 663 WP_048356448.1 endonuclease III -
  COP00_RS05485 (COP00_05485) - 1038848..1039543 (-) 696 WP_048356447.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23016.15 Da        Isoelectric Point: 9.5228

>NTDB_id=247488 COP00_RS05465 WP_048356450.1 1034339..1034935(+) (recU) [Bacillus glycinifermentans strain KBN06P03352]
MIRYPNGKTYQPKQAASSLKKKPSYSNRGMTLEDDLNETNIYYLNHSIAVIHKKPTPVQIVHVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQGGICFVIISAFGEIYFLEAEKLFYFWERKNQNG
RKSIRKDELEEAGHPISLGYSPRIDYIKVIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=247488 COP00_RS05465 WP_048356450.1 1034339..1034935(+) (recU) [Bacillus glycinifermentans strain KBN06P03352]
GTGATTCGTTATCCGAACGGCAAAACCTATCAGCCGAAACAAGCTGCCTCATCCTTAAAAAAGAAGCCGTCGTACAGCAA
TCGCGGGATGACCCTCGAAGACGATTTGAATGAAACGAATATATATTATCTGAATCATTCAATCGCGGTCATTCATAAAA
AACCGACACCTGTGCAGATCGTTCATGTCGATTATCCGAAGCGAAGCGCAGCGGTCATTAAAGAAGCATATTTCAAGCAG
TCGTCGACTACTGATTATAACGGGGTTTATAAAGGGCGCTACATCGATTTTGAAGCGAAAGAAACCAAAAGCAGGACGTC
TTTCCCCTTGCAGAATTTCCACGATCACCAGATCGAGCATATGAAGCAGGTCGTGGCACAGGGCGGGATATGCTTTGTTA
TTATATCCGCATTCGGCGAGATTTATTTTTTGGAAGCGGAAAAATTATTTTATTTCTGGGAGAGAAAAAACCAAAACGGC
AGAAAGTCGATCCGAAAAGACGAACTTGAAGAAGCCGGACACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAAGTTATTGACCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6DT11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.587

100

0.838

Multiple sequence alignment