Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   CO204_RS08355 Genome accession   NZ_CP023477
Coordinates   1646074..1646799 (-) Length   241 a.a.
NCBI ID   WP_002291641.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641074..1651799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS08320 (CO204_08275) - 1641245..1641541 (-) 297 WP_002263922.1 YlxR family protein -
  CO204_RS08325 (CO204_08280) nusA 1641559..1642752 (-) 1194 WP_002262603.1 transcription termination factor NusA -
  CO204_RS08330 (CO204_08285) rimP 1642788..1643279 (-) 492 WP_002267543.1 ribosome maturation factor RimP -
  CO204_RS08340 (CO204_08295) trmB 1643551..1644186 (-) 636 WP_019313084.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CO204_RS08345 (CO204_08300) ccrZ 1644196..1644978 (-) 783 WP_019313083.1 cell cycle regulator CcrZ -
  CO204_RS08350 (CO204_08305) pptB 1645037..1646071 (-) 1035 WP_002291637.1 ABC transporter permease Regulator
  CO204_RS08355 (CO204_08310) pptA 1646074..1646799 (-) 726 WP_002291641.1 ABC transporter ATP-binding protein Regulator
  CO204_RS08360 (CO204_08315) - 1646864..1647283 (+) 420 WP_002262609.1 HIT family protein -
  CO204_RS08365 (CO204_08320) - 1647280..1647573 (+) 294 WP_002265649.1 hypothetical protein -
  CO204_RS08370 (CO204_08325) brpA 1647743..1648963 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  CO204_RS08375 (CO204_08330) tsaE 1649294..1649737 (-) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  CO204_RS08380 (CO204_08335) - 1649866..1651296 (-) 1431 WP_002265163.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26716.29 Da        Isoelectric Point: 4.9888

>NTDB_id=247441 CO204_RS08355 WP_002291641.1 1646074..1646799(-) (pptA) [Streptococcus mutans strain LAR01]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKTKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=247441 CO204_RS08355 WP_002291641.1 1646074..1646799(-) (pptA) [Streptococcus mutans strain LAR01]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAACATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACACCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCTTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGACTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.569

99.17

0.759
  pptA Streptococcus salivarius strain HSISS4

76.151

99.17

0.755

Multiple sequence alignment