Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   CO204_RS08350 Genome accession   NZ_CP023477
Coordinates   1645037..1646071 (-) Length   344 a.a.
NCBI ID   WP_002291637.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1640037..1651071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS08315 (CO204_08270) - 1640950..1641252 (-) 303 WP_002280994.1 YlxQ-related RNA-binding protein -
  CO204_RS08320 (CO204_08275) - 1641245..1641541 (-) 297 WP_002263922.1 YlxR family protein -
  CO204_RS08325 (CO204_08280) nusA 1641559..1642752 (-) 1194 WP_002262603.1 transcription termination factor NusA -
  CO204_RS08330 (CO204_08285) rimP 1642788..1643279 (-) 492 WP_002267543.1 ribosome maturation factor RimP -
  CO204_RS08340 (CO204_08295) trmB 1643551..1644186 (-) 636 WP_019313084.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CO204_RS08345 (CO204_08300) ccrZ 1644196..1644978 (-) 783 WP_019313083.1 cell cycle regulator CcrZ -
  CO204_RS08350 (CO204_08305) pptB 1645037..1646071 (-) 1035 WP_002291637.1 ABC transporter permease Regulator
  CO204_RS08355 (CO204_08310) pptA 1646074..1646799 (-) 726 WP_002291641.1 ABC transporter ATP-binding protein Regulator
  CO204_RS08360 (CO204_08315) - 1646864..1647283 (+) 420 WP_002262609.1 HIT family protein -
  CO204_RS08365 (CO204_08320) - 1647280..1647573 (+) 294 WP_002265649.1 hypothetical protein -
  CO204_RS08370 (CO204_08325) brpA 1647743..1648963 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  CO204_RS08375 (CO204_08330) tsaE 1649294..1649737 (-) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40554.99 Da        Isoelectric Point: 10.5992

>NTDB_id=247440 CO204_RS08350 WP_002291637.1 1645037..1646071(-) (pptB) [Streptococcus mutans strain LAR01]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLALVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTTLLPKETHKAWTNLYLRAFLRSGDYLGLIFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=247440 CO204_RS08350 WP_002291637.1 1645037..1646071(-) (pptB) [Streptococcus mutans strain LAR01]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGTCAGCTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGCGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAGGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAACATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGATCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.163

100

0.512

  pptB Streptococcus thermophilus LMD-9

50.581

100

0.506


Multiple sequence alignment