Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY68_RS14050 Genome accession   NZ_CP028759
Coordinates   2935075..2936502 (+) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain A15     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2930075..2941502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY68_RS14010 (AOY68_14945) yeeW 2930260..2930454 (+) 195 WP_000988600.1 DUF5983 family protein -
  AOY68_RS14015 (AOY68_14950) - 2930500..2930580 (+) 81 Protein_2731 hypothetical protein -
  AOY68_RS14020 (AOY68_14955) - 2930869..2930997 (-) 129 Protein_2732 transposase domain-containing protein -
  AOY68_RS14025 (AOY68_14960) - 2931069..2931251 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AOY68_RS14030 (AOY68_14965) tmaR 2931352..2931681 (-) 330 WP_000450409.1 DUF496 family protein -
  AOY68_RS14035 (AOY68_14970) yeeA 2931853..2932911 (-) 1059 WP_001200891.1 FUSC family protein -
  AOY68_RS14040 (AOY68_14975) sbmC 2933108..2933581 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  AOY68_RS14045 (AOY68_14980) dacD 2933700..2934866 (-) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY68_RS14050 (AOY68_14985) sbcB 2935075..2936502 (+) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  AOY68_RS14055 (AOY68_14990) tsuB 2936545..2936772 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY68_RS14060 (AOY68_14995) tsuA 2936786..2937844 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY68_RS14065 (AOY68_15000) plaP 2938023..2939381 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY68_RS14070 (AOY68_15005) yoeI 2939371..2939433 (-) 63 WP_010723108.1 membrane protein YoeI -
  AOY68_RS14075 (AOY68_15010) yeeY 2939648..2940577 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY68_RS14080 (AOY68_15015) yeeZ 2940623..2941447 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=247440 AOY68_RS14050 WP_000980582.1 2935075..2936502(+) (sbcB) [Escherichia coli strain A15]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=247440 AOY68_RS14050 WP_000980582.1 2935075..2936502(+) (sbcB) [Escherichia coli strain A15]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment