Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   CO204_RS01665 Genome accession   NZ_CP023477
Coordinates   315009..315365 (-) Length   118 a.a.
NCBI ID   WP_002262669.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 310009..320365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS01630 (CO204_01630) - 311301..311504 (-) 204 WP_002267523.1 hypothetical protein -
  CO204_RS01635 (CO204_01635) - 311809..312054 (+) 246 WP_002263367.1 hypothetical protein -
  CO204_RS01640 (CO204_01640) rpsF 312210..312500 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  CO204_RS01645 (CO204_01645) ssbA 312518..313012 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  CO204_RS01650 (CO204_01650) rpsR 313041..313280 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  CO204_RS01655 (CO204_01655) - 313599..314318 (+) 720 WP_002262671.1 TraX family protein -
  CO204_RS01660 (CO204_01660) hdrM 314326..315012 (-) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  CO204_RS01665 (CO204_01665) hdrR 315009..315365 (-) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  CO204_RS01670 (CO204_01670) - 315504..316166 (-) 663 WP_002262668.1 DUF1129 domain-containing protein -
  CO204_RS01675 (CO204_01675) - 316449..317393 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -
  CO204_RS01680 (CO204_01680) - 317793..318014 (-) 222 WP_019313410.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14134.45 Da        Isoelectric Point: 10.3603

>NTDB_id=247407 CO204_RS01665 WP_002262669.1 315009..315365(-) (hdrR) [Streptococcus mutans strain LAR01]
MEIHLNPKHQSVEVFLEKEIFFLNIRDILFIEINNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=247407 CO204_RS01665 WP_002262669.1 315009..315365(-) (hdrR) [Streptococcus mutans strain LAR01]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAGTAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAACAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

100

100

1

Multiple sequence alignment