Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CO204_RS01645 Genome accession   NZ_CP023477
Coordinates   312518..313012 (+) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans strain LAR01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 307518..318012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS01620 (CO204_01620) - 307879..308928 (+) 1050 WP_002271847.1 zinc-dependent alcohol dehydrogenase family protein -
  CO204_RS01625 (CO204_01625) mutY 309118..310263 (-) 1146 WP_002276386.1 A/G-specific adenine glycosylase -
  CO204_RS01630 (CO204_01630) - 311301..311504 (-) 204 WP_002267523.1 hypothetical protein -
  CO204_RS01635 (CO204_01635) - 311809..312054 (+) 246 WP_002263367.1 hypothetical protein -
  CO204_RS01640 (CO204_01640) rpsF 312210..312500 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  CO204_RS01645 (CO204_01645) ssbA 312518..313012 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  CO204_RS01650 (CO204_01650) rpsR 313041..313280 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  CO204_RS01655 (CO204_01655) - 313599..314318 (+) 720 WP_002262671.1 TraX family protein -
  CO204_RS01660 (CO204_01660) hdrM 314326..315012 (-) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  CO204_RS01665 (CO204_01665) hdrR 315009..315365 (-) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  CO204_RS01670 (CO204_01670) - 315504..316166 (-) 663 WP_002262668.1 DUF1129 domain-containing protein -
  CO204_RS01675 (CO204_01675) - 316449..317393 (-) 945 WP_002262667.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=247405 CO204_RS01645 WP_002261867.1 312518..313012(+) (ssbA) [Streptococcus mutans strain LAR01]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=247405 CO204_RS01645 WP_002261867.1 312518..313012(+) (ssbA) [Streptococcus mutans strain LAR01]
ATGATTAATAATGTAGTACTGGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACCCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAGCGTGAAGCTGATTTCATTAACATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366

Multiple sequence alignment