Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY69_RS17070 Genome accession   NZ_CP028758
Coordinates   3628368..3629105 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A16     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3623368..3634105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY69_RS17055 (AOY69_18095) clpC 3623822..3626395 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY69_RS17060 (AOY69_18100) yfiH 3626525..3627256 (-) 732 WP_119458104.1 purine nucleoside phosphorylase YfiH -
  AOY69_RS17065 (AOY69_18105) rluD 3627253..3628233 (-) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY69_RS17070 (AOY69_18110) comL 3628368..3629105 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY69_RS17075 (AOY69_18120) raiA 3629376..3629717 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY69_RS17080 (AOY69_18125) pheL 3629821..3629868 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY69_RS17085 (AOY69_18130) pheA 3629967..3631127 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY69_RS17090 (AOY69_18135) tyrA 3631170..3632291 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY69_RS17095 (AOY69_18140) aroF 3632302..3633372 (-) 1071 WP_119458103.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY69_RS17100 (AOY69_18145) yfiL 3633582..3633947 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=247370 AOY69_RS17070 WP_000197686.1 3628368..3629105(+) (comL) [Escherichia coli strain A16]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=247370 AOY69_RS17070 WP_000197686.1 3628368..3629105(+) (comL) [Escherichia coli strain A16]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376