Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FORC72_RS03195 Genome accession   NZ_CP023472
Coordinates   605937..606551 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 600937..611551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS03185 (FORC72_0506) aceF 602236..604113 (+) 1878 WP_120458590.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  FORC72_RS03190 (FORC72_0507) lpdA 604382..605809 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  FORC72_RS03195 (FORC72_0508) opaR 605937..606551 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  FORC72_RS03200 (FORC72_0509) hpt 606870..607400 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  FORC72_RS03205 (FORC72_0510) can 607474..608142 (-) 669 WP_005462578.1 carbonate dehydratase -
  FORC72_RS03210 (FORC72_0511) - 608426..610096 (+) 1671 WP_120458591.1 SulP family inorganic anion transporter -
  FORC72_RS03220 (FORC72_0512) - 610348..611265 (+) 918 WP_017447686.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=247340 FORC72_RS03195 WP_005479697.1 605937..606551(-) (opaR) [Vibrio parahaemolyticus strain FORC_072]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=247340 FORC72_RS03195 WP_005479697.1 605937..606551(-) (opaR) [Vibrio parahaemolyticus strain FORC_072]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCTGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment