Detailed information NTG0247332

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC72_RS02960
• Genome accession: NZ_CP023472
• Coordinates: 561094..562083 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_072
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 556094..567083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC72_RS02925 (FORC72_0464)	ftsB	556102..556383 (+)	282	WP_005455577.1	cell division protein FtsB	-
FORC72_RS02930 (FORC72_0465)	ispD	556385..557089 (+)	705	WP_120458584.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC72_RS02935 (FORC72_0466)	ispF	557107..557583 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC72_RS02940 (FORC72_0467)	truD	557630..558673 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
FORC72_RS02945 (FORC72_0468)	surE	558673..559449 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
FORC72_RS02950 (FORC72_0469)	-	559449..560075 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC72_RS02955 (FORC72_0470)	-	560090..561013 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC72_RS02960 (FORC72_0471)	rpoS	561094..562083 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC72_RS02965 (FORC72_0472)	mutS	562162..564723 (-)	2562	WP_120458585.1	DNA mismatch repair protein MutS	-
FORC72_RS02970 (FORC72_0473)	pncC	564808..565290 (+)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
FORC72_RS02975 (FORC72_0474)	recA	565491..566534 (+)	1044	WP_120458586.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=247332 FORC72_RS02960 WP_005478537.1 561094..562083(+) (rpoS) [Vibrio parahaemolyticus strain FORC_072]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=247332 FORC72_RS02960 WP_005478537.1 561094..562083(+) (rpoS) [Vibrio parahaemolyticus strain FORC_072]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCAGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCACTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CACGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851