Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CNN82_RS22700 Genome accession   NZ_CP023466
Coordinates   4900994..4901629 (-) Length   211 a.a.
NCBI ID   WP_007941964.1    Uniprot ID   J2VZZ3
Organism   Pseudomonas frederiksbergensis strain KNU-15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4895994..4906629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNN82_RS22665 (CNN82_22665) - 4896393..4896863 (-) 471 WP_007941956.1 (2Fe-2S)-binding protein -
  CNN82_RS22670 (CNN82_22670) murB 4897107..4898126 (-) 1020 WP_028938942.1 UDP-N-acetylmuramate dehydrogenase -
  CNN82_RS22675 (CNN82_22675) - 4898123..4898587 (-) 465 WP_019582718.1 low molecular weight protein-tyrosine-phosphatase -
  CNN82_RS22680 (CNN82_22680) kdsB 4898587..4899351 (-) 765 WP_018926233.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CNN82_RS22685 (CNN82_22685) - 4899348..4899533 (-) 186 WP_003179363.1 Trm112 family protein -
  CNN82_RS22690 (CNN82_22690) lpxK 4899559..4900569 (-) 1011 WP_096480898.1 tetraacyldisaccharide 4'-kinase -
  CNN82_RS22695 (CNN82_22695) - 4900569..4900997 (-) 429 WP_018926235.1 biopolymer transporter ExbD -
  CNN82_RS22700 (CNN82_22700) exbB 4900994..4901629 (-) 636 WP_007941964.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CNN82_RS22705 (CNN82_22705) comA 4901727..4903961 (-) 2235 WP_096480899.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CNN82_RS22710 (CNN82_22710) - 4904098..4904472 (+) 375 Protein_4453 DUF2062 domain-containing protein -
  CNN82_RS22715 (CNN82_22715) - 4904722..4905501 (-) 780 WP_018926238.1 ABC transporter permease -
  CNN82_RS22720 (CNN82_22720) - 4905498..4906430 (-) 933 WP_028938938.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22911.14 Da        Isoelectric Point: 6.8770

>NTDB_id=247272 CNN82_RS22700 WP_007941964.1 4900994..4901629(-) (exbB) [Pseudomonas frederiksbergensis strain KNU-15]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=247272 CNN82_RS22700 WP_007941964.1 4900994..4901629(-) (exbB) [Pseudomonas frederiksbergensis strain KNU-15]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGCTGGGCGAGATCCTGGCCGCCGGTCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGTTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCTCCGTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCGCAGTGCTGGCCGGAGGTATTTCCAAGGCACTGATCACCACCGCC
GCCGGCCTGATGGTCGGTATTCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGTCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAAGAGGCGATCAAACTGGTCGAGGTTATTCAGGGCGATCGCGACGTGGACCTGGCCGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2VZZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment