Detailed information NTG0247273

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: CNN82_RS22705
• Genome accession: NZ_CP023466
• Coordinates: 4901727..4903961 (-)
• Length: 744 a.a.
• NCBI ID: WP_096480899.1
• Uniprot ID: A0AB33EJH1
• Organism: Pseudomonas frederiksbergensis strain KNU-15
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4896727..4908961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNN82_RS22670 (CNN82_22670)	murB	4897107..4898126 (-)	1020	WP_028938942.1	UDP-N-acetylmuramate dehydrogenase	-
CNN82_RS22675 (CNN82_22675)	-	4898123..4898587 (-)	465	WP_019582718.1	low molecular weight protein-tyrosine-phosphatase	-
CNN82_RS22680 (CNN82_22680)	kdsB	4898587..4899351 (-)	765	WP_018926233.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CNN82_RS22685 (CNN82_22685)	-	4899348..4899533 (-)	186	WP_003179363.1	Trm112 family protein	-
CNN82_RS22690 (CNN82_22690)	lpxK	4899559..4900569 (-)	1011	WP_096480898.1	tetraacyldisaccharide 4'-kinase	-
CNN82_RS22695 (CNN82_22695)	-	4900569..4900997 (-)	429	WP_018926235.1	biopolymer transporter ExbD	-
CNN82_RS22700 (CNN82_22700)	exbB	4900994..4901629 (-)	636	WP_007941964.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
CNN82_RS22705 (CNN82_22705)	comA	4901727..4903961 (-)	2235	WP_096480899.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CNN82_RS22710 (CNN82_22710)	-	4904098..4904472 (+)	375	Protein_4453	DUF2062 domain-containing protein	-
CNN82_RS22715 (CNN82_22715)	-	4904722..4905501 (-)	780	WP_018926238.1	ABC transporter permease	-
CNN82_RS22720 (CNN82_22720)	-	4905498..4906430 (-)	933	WP_028938938.1	ABC transporter ATP-binding protein	-
CNN82_RS22725 (CNN82_22725)	-	4906564..4907187 (-)	624	WP_019581182.1	glutathione S-transferase	-
CNN82_RS22730 (CNN82_22730)	-	4907231..4907890 (-)	660	WP_028938937.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81839.11 Da
• Isoelectric Point: 9.7926

>NTDB_id=247273 CNN82_RS22705 WP_096480899.1 4901727..4903961(-) (comA) [Pseudomonas frederiksbergensis strain KNU-15]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAHGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFKGLALVAGQLPAWVPVAVPLWVWAFGTLGAFLLLLPRGVPLRPMGWPLLLLLV
VPPRHTLPEGVAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPTLRKLGVNELDLMLISHADADHAGGA
RVIAGGLPVTRVLSGDPLALPDELYAEGCESGQQWTWDDVRFQLWQWPSASDSNQKSCVLQIEANGERLLLTGDIDTAAE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLSALQPKVVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAEEGAIRLQL
GRFKPPWTMLQERRFWRDPPALRQ

Nucleotide

• Length: 2235 bp

>NTDB_id=247273 CNN82_RS22705 WP_096480899.1 4901727..4903961(-) (comA) [Pseudomonas frederiksbergensis strain KNU-15]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGCACTGCCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGTTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTTGGCTTCAGTT
GGGCGTGCGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGGGTTACCGGGTTGCCGCAGCAGGCCGAGGGTGTAGTGCGTTTCGAACTGACAGACAGTCAGTCGCGTCGCACCCAACT
GCCCCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCTCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACTGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCACGGGCGAACGGGAGCGTTGACGGCGTTGGTGCTGGGGGACGGCGCCGGGCTGAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCCAGACGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
AGCGCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATTGGTCTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTAGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCAATCGGCCTGTGCCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTTCTGGCGGTGCCTTGGATCAGTCTGCTGGTCTTGCCGCCGGCGTTG
CTCGGAACGCTGCTGTTGCCCGTTCCCTATGTGGGCGAGGGGTTACTGTGGTTGGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGCGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGTTGTGGGTTTGGGCATTCGGCA
CGCTGGGCGCATTTCTGCTGTTACTGCCAAGGGGCGTGCCGTTGCGCCCGATGGGCTGGCCGTTGTTGCTGTTGCTGGTT
GTTCCGCCTCGGCACACACTGCCTGAAGGTGTCGCCGAAATCTGGCAACTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACACACTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGTGAGCGGGTGGTGTTGC
CAACATTGCGCAAACTGGGGGTGAATGAACTTGATCTGATGCTGATCAGCCACGCCGACGCCGACCATGCTGGTGGCGCG
CGAGTCATTGCCGGGGGATTGCCGGTGACGCGGGTGCTGAGCGGCGATCCATTGGCCCTGCCAGACGAGCTATACGCCGA
GGGCTGCGAGAGCGGTCAACAGTGGACTTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGCCGTCGGCCAGTGACAGCA
ATCAGAAATCCTGCGTGCTACAGATCGAAGCCAACGGTGAACGATTGCTGCTGACCGGCGATATCGATACCGCAGCCGAG
CGGGCGCTGCTCGACAGTCCACTGGCGGTGCCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGTTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCAACCCAAAGTCGTGCTGATCTCTCGCGGCAACGGCAATTCTTTCGGGCATCCCCATC
CCACGGTCGTGGCGCGCTATCAAAAACGTGGCATGGCGATCTACGACAGCGCCGAGGAGGGCGCCATTCGTCTACAACTG
GGGCGCTTCAAACCACCGTGGACGATGCTTCAGGAACGGCGCTTCTGGCGCGATCCGCCAGCATTGCGCCAGTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.561	96.64	0.614
comA	Ralstonia pseudosolanacearum GMI1000	33.78	100	0.372