Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   M28_RS07525 Genome accession   NC_007296
Coordinates   1456483..1457517 (-) Length   344 a.a.
NCBI ID   WP_011285080.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS6180     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1451483..1462517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M28_RS07490 (M28_Spy1453) - 1452259..1452561 (-) 303 WP_011285079.1 YlxQ-related RNA-binding protein -
  M28_RS07495 (M28_Spy1454) rnpM 1452554..1452850 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  M28_RS07500 (M28_Spy1455) nusA 1452866..1454023 (-) 1158 WP_002983485.1 transcription termination factor NusA -
  M28_RS07505 (M28_Spy1456) rimP 1454198..1454734 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  M28_RS07515 (M28_Spy1457) trmB 1454993..1455628 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  M28_RS07520 (M28_Spy1458) ccrZ 1455628..1456419 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  M28_RS07525 (M28_Spy1459) pptB 1456483..1457517 (-) 1035 WP_011285080.1 ABC transporter permease Regulator
  M28_RS07530 (M28_Spy1460) pptA 1457520..1458245 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  M28_RS07535 (M28_Spy1461) - 1458317..1458736 (+) 420 WP_011285081.1 HIT family protein -
  M28_RS07540 (M28_Spy1462) - 1458733..1459089 (+) 357 WP_002988657.1 hypothetical protein -
  M28_RS07545 (M28_Spy1463) brpA 1459200..1460483 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  M28_RS07550 (M28_Spy1464) - 1460492..1461016 (-) 525 WP_011285082.1 GNAT family N-acetyltransferase -
  M28_RS07555 (M28_Spy1465) tsaE 1460991..1461452 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40272.48 Da        Isoelectric Point: 10.3422

>NTDB_id=24724 M28_RS07525 WP_011285080.1 1456483..1457517(-) (pptB) [Streptococcus pyogenes MGAS6180]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGYAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAILLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=24724 M28_RS07525 WP_011285080.1 1456483..1457517(-) (pptB) [Streptococcus pyogenes MGAS6180]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTATGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTTTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTATATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment