Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | COO52_RS07225 | Genome accession | NZ_CP023448 |
| Coordinates | 1444390..1444965 (-) | Length | 191 a.a. |
| NCBI ID | WP_096479194.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HPJP26 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1439390..1449965
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| COO52_RS07215 | - | 1441110..1442321 (-) | 1212 | WP_096479192.1 | restriction endonuclease subunit S | - |
| COO52_RS07220 | - | 1442318..1444357 (-) | 2040 | WP_096479193.1 | class I SAM-dependent DNA methyltransferase | - |
| COO52_RS07225 | comFC | 1444390..1444965 (-) | 576 | WP_096479194.1 | ComF family protein | Machinery gene |
| COO52_RS07230 | tmk | 1444953..1445528 (-) | 576 | WP_096479195.1 | dTMP kinase | - |
| COO52_RS07235 | coaD | 1445530..1446003 (-) | 474 | WP_001169263.1 | pantetheine-phosphate adenylyltransferase | - |
| COO52_RS07240 | - | 1446003..1446566 (-) | 564 | WP_096479196.1 | UbiX family flavin prenyltransferase | - |
| COO52_RS07245 | flgA | 1446576..1447232 (-) | 657 | WP_096479197.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| COO52_RS07250 | uvrD | 1447229..1449274 (-) | 2046 | WP_307896924.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21244.88 Da Isoelectric Point: 9.0901
>NTDB_id=247200 COO52_RS07225 WP_096479194.1 1444390..1444965(-) (comFC) [Helicobacter pylori strain HPJP26]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=247200 COO52_RS07225 WP_096479194.1 1444390..1444965(-) (comFC) [Helicobacter pylori strain HPJP26]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGCATCGCCATTGATGATAAAGTCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |