Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   CLI98_RS11340 Genome accession   NZ_CP023431
Coordinates   2220651..2221049 (-) Length   132 a.a.
NCBI ID   WP_022552569.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2215651..2226049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS11315 (CLI98_02230) - 2215823..2217025 (+) 1203 WP_014416870.1 GTP-binding protein -
  CLI98_RS11320 (CLI98_02231) - 2217090..2218226 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  CLI98_RS11325 (CLI98_02232) - 2218241..2218675 (+) 435 WP_014416871.1 RDD family protein -
  CLI98_RS11330 (CLI98_02233) - 2218747..2219070 (+) 324 WP_007409357.1 YckD family protein -
  CLI98_RS11335 (CLI98_02234) - 2219174..2220610 (+) 1437 WP_022552568.1 family 1 glycosylhydrolase -
  CLI98_RS11340 (CLI98_02235) nin/comJ 2220651..2221049 (-) 399 WP_022552569.1 competence protein ComJ Regulator
  CLI98_RS11345 (CLI98_02236) nucA/comI 2221070..2221507 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CLI98_RS11350 (CLI98_02237) hxlB 2221838..2222395 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  CLI98_RS11355 (CLI98_02238) hxlA 2222392..2223027 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  CLI98_RS11360 (CLI98_02239) - 2223259..2223621 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14897.88 Da        Isoelectric Point: 4.7846

>NTDB_id=247080 CLI98_RS11340 WP_022552569.1 2220651..2221049(-) (nin/comJ) [Bacillus velezensis strain SCGB 574]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVTSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=247080 CLI98_RS11340 WP_022552569.1 2220651..2221049(-) (nin/comJ) [Bacillus velezensis strain SCGB 574]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTAACATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment