Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY74_RS16795 Genome accession   NZ_CP028754
Coordinates   3494227..3494964 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A21     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489227..3499964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY74_RS16780 (AOY74_17720) clpC 3489681..3492254 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY74_RS16785 (AOY74_17725) yfiH 3492384..3493115 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  AOY74_RS16790 (AOY74_17730) rluD 3493112..3494092 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY74_RS16795 (AOY74_17735) comL 3494227..3494964 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY74_RS16800 (AOY74_17745) raiA 3495234..3495575 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY74_RS16805 (AOY74_17750) pheL 3495679..3495726 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY74_RS16810 (AOY74_17755) pheA 3495825..3496985 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY74_RS16815 (AOY74_17760) tyrA 3497028..3498149 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY74_RS16820 (AOY74_17765) aroF 3498160..3499230 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY74_RS16825 (AOY74_17770) yfiL 3499440..3499805 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=247044 AOY74_RS16795 WP_000197686.1 3494227..3494964(+) (comL) [Escherichia coli strain A21]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=247044 AOY74_RS16795 WP_000197686.1 3494227..3494964(+) (comL) [Escherichia coli strain A21]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment