Detailed information
Bioinformatically predicted
Overview
| Name | comL | Type | Machinery gene |
| Locus tag | CGZ65_RS08585 | Genome accession | NZ_CP023429 |
| Coordinates | 1695692..1696495 (+) | Length | 267 a.a. |
| NCBI ID | WP_096295541.1 | Uniprot ID | A0A3N4N4J9 |
| Organism | Neisseria weixii strain 10022 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1694569..1719080 | 1695692..1696495 | within | 0 |
Gene organization within MGE regions
Location: 1694569..1719080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGZ65_RS08580 (CGZ65_08580) | rluD | 1694569..1695693 (-) | 1125 | WP_096295540.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| CGZ65_RS08585 (CGZ65_08585) | comL | 1695692..1696495 (+) | 804 | WP_096295541.1 | outer membrane protein assembly factor BamD | Machinery gene |
| CGZ65_RS08590 (CGZ65_08590) | - | 1696590..1696853 (-) | 264 | WP_096295542.1 | hypothetical protein | - |
| CGZ65_RS08595 (CGZ65_08595) | - | 1697041..1697439 (-) | 399 | Protein_1760 | transposase | - |
| CGZ65_RS08600 (CGZ65_08600) | - | 1697566..1698328 (-) | 763 | Protein_1761 | DNA adenine methylase | - |
| CGZ65_RS08605 (CGZ65_08605) | - | 1698383..1699228 (-) | 846 | WP_089036639.1 | DNA cytosine methyltransferase | - |
| CGZ65_RS08610 (CGZ65_08610) | - | 1699197..1699394 (-) | 198 | WP_089036638.1 | Com family DNA-binding transcriptional regulator | - |
| CGZ65_RS08615 (CGZ65_08615) | - | 1699569..1700555 (-) | 987 | WP_157742759.1 | hypothetical protein | - |
| CGZ65_RS13420 (CGZ65_08620) | - | 1700585..1701145 (-) | 561 | WP_198345267.1 | hypothetical protein | - |
| CGZ65_RS08625 (CGZ65_08625) | - | 1701145..1701474 (-) | 330 | WP_157742713.1 | hypothetical protein | - |
| CGZ65_RS08630 (CGZ65_08630) | - | 1701468..1701896 (-) | 429 | WP_096295117.1 | hypothetical protein | - |
| CGZ65_RS14165 | - | 1701970..1702395 (-) | 426 | WP_232507409.1 | hypothetical protein | - |
| CGZ65_RS14170 | - | 1702347..1702715 (-) | 369 | WP_232507410.1 | hypothetical protein | - |
| CGZ65_RS08640 (CGZ65_08640) | - | 1702748..1703557 (-) | 810 | WP_096295115.1 | phage tail protein | - |
| CGZ65_RS08645 (CGZ65_08645) | - | 1703638..1704153 (-) | 516 | WP_096295114.1 | hypothetical protein | - |
| CGZ65_RS13425 | - | 1704102..1704833 (-) | 732 | WP_198345268.1 | hypothetical protein | - |
| CGZ65_RS14935 (CGZ65_08655) | - | 1704835..1705412 (-) | 578 | Protein_1773 | phage tail protein | - |
| CGZ65_RS08660 (CGZ65_08660) | - | 1705416..1706558 (-) | 1143 | WP_096295113.1 | baseplate J/gp47 family protein | - |
| CGZ65_RS08665 (CGZ65_08665) | - | 1706549..1706926 (-) | 378 | WP_096295112.1 | GPW/gp25 family protein | - |
| CGZ65_RS08670 (CGZ65_08670) | - | 1707005..1707583 (-) | 579 | WP_198345269.1 | phage baseplate assembly protein V | - |
| CGZ65_RS08675 (CGZ65_08675) | - | 1707567..1708670 (-) | 1104 | WP_096295111.1 | phage late control D family protein | - |
| CGZ65_RS08680 (CGZ65_08680) | - | 1708670..1708897 (-) | 228 | WP_096295110.1 | tail protein X | - |
| CGZ65_RS08685 (CGZ65_08685) | - | 1708894..1709790 (-) | 897 | WP_096295109.1 | phage tail protein | - |
| CGZ65_RS08690 (CGZ65_08690) | - | 1709790..1710314 (-) | 525 | WP_096295545.1 | hypothetical protein | - |
| CGZ65_RS14185 | - | 1710311..1711384 (-) | 1074 | WP_232507413.1 | phage tail tape measure protein | - |
| CGZ65_RS14190 | - | 1711384..1712367 (-) | 984 | WP_232507414.1 | phage tail tape measure protein | - |
| CGZ65_RS08700 (CGZ65_08700) | - | 1712410..1712682 (+) | 273 | WP_096295546.1 | hypothetical protein | - |
| CGZ65_RS08705 (CGZ65_08705) | - | 1712679..1712822 (-) | 144 | WP_198345270.1 | GpE family phage tail protein | - |
| CGZ65_RS08710 (CGZ65_08710) | - | 1712845..1713150 (-) | 306 | WP_096295547.1 | phage tail assembly protein | - |
| CGZ65_RS08715 (CGZ65_08715) | - | 1713260..1713778 (-) | 519 | WP_096295548.1 | phage major tail tube protein | - |
| CGZ65_RS08720 (CGZ65_08720) | - | 1713790..1714104 (-) | 315 | Protein_1787 | phage tail protein | - |
| CGZ65_RS08725 (CGZ65_08725) | - | 1714108..1714413 (+) | 306 | WP_415906952.1 | hypothetical protein | - |
| CGZ65_RS08735 (CGZ65_08735) | - | 1714585..1716090 (+) | 1506 | WP_096295550.1 | DUF935 domain-containing protein | - |
| CGZ65_RS08740 (CGZ65_08740) | - | 1716087..1716992 (+) | 906 | WP_096295070.1 | phage minor head protein | - |
| CGZ65_RS08750 (CGZ65_08750) | - | 1717179..1717619 (+) | 441 | WP_096295069.1 | phage virion morphogenesis protein | - |
| CGZ65_RS14195 | - | 1717757..1718373 (-) | 617 | Protein_1792 | transposase | - |
| CGZ65_RS08765 (CGZ65_08765) | - | 1718785..1719071 (-) | 287 | Protein_1793 | ComEA family DNA-binding protein | - |
Sequence
Protein
Download Length: 267 a.a. Molecular weight: 31194.23 Da Isoelectric Point: 7.9862
>NTDB_id=247025 CGZ65_RS08585 WP_096295541.1 1695692..1696495(+) (comL) [Neisseria weixii strain 10022]
MKKILLLVSLSLALAACANKGTIDKDAQITQDWSVEQLYAEAQDELNSNNYTRAIKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPNS
KYAPDATARMTKLVDALGGNEIAVARYYMKRGAYVAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAQDTRRI
LQQNFPESPFLTHEWRNGDMPWWRYWK
MKKILLLVSLSLALAACANKGTIDKDAQITQDWSVEQLYAEAQDELNSNNYTRAIKLYELLESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYHAFAQLVERYPNS
KYAPDATARMTKLVDALGGNEIAVARYYMKRGAYVAAINRAQKIVQQYQNTRYVEESLAMMELAYKKLEKPQLAQDTRRI
LQQNFPESPFLTHEWRNGDMPWWRYWK
Nucleotide
Download Length: 804 bp
>NTDB_id=247025 CGZ65_RS08585 WP_096295541.1 1695692..1696495(+) (comL) [Neisseria weixii strain 10022]
ATGAAAAAAATTCTTTTATTAGTTTCTTTAAGTTTGGCGCTCGCCGCATGTGCCAATAAAGGCACCATCGATAAAGACGC
TCAAATTACTCAGGATTGGAGTGTGGAACAGCTTTATGCTGAAGCACAAGATGAATTGAACAGCAATAATTATACGCGAG
CCATCAAGTTATATGAACTTTTGGAATCACGCTTCCCCAATGGCCGCTACGCGCAGCAATCACAATTGGATACTGCTTAT
GCGTACTATAAAGACGACGAGCCGGAAAAAGCCTTGGCTGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCCGAA
CATGGATTATGCCTTATATTTAAAAGGCTTGGTATTGTTTAATGAAGATCAGTCTTTCTTAAACAAATTGGCATCGCAAG
ACTGGTCAGACCGTGACCCTAAAGCCAACCGCGATGCTTATCACGCTTTTGCACAATTGGTGGAACGCTACCCGAACAGT
AAATATGCACCAGATGCCACCGCACGCATGACCAAATTGGTTGACGCATTGGGCGGCAATGAAATCGCCGTTGCCCGTTA
TTACATGAAACGCGGCGCATACGTTGCAGCCATTAACCGTGCACAAAAAATTGTTCAACAGTATCAAAATACGCGTTATG
TTGAAGAATCTTTAGCCATGATGGAACTGGCCTACAAAAAACTGGAAAAACCGCAACTGGCTCAGGATACACGTCGTATT
TTGCAGCAAAATTTTCCGGAAAGCCCATTCTTAACCCATGAATGGCGCAATGGCGACATGCCTTGGTGGCGTTATTGGAA
ATAA
ATGAAAAAAATTCTTTTATTAGTTTCTTTAAGTTTGGCGCTCGCCGCATGTGCCAATAAAGGCACCATCGATAAAGACGC
TCAAATTACTCAGGATTGGAGTGTGGAACAGCTTTATGCTGAAGCACAAGATGAATTGAACAGCAATAATTATACGCGAG
CCATCAAGTTATATGAACTTTTGGAATCACGCTTCCCCAATGGCCGCTACGCGCAGCAATCACAATTGGATACTGCTTAT
GCGTACTATAAAGACGACGAGCCGGAAAAAGCCTTGGCTGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCCGAA
CATGGATTATGCCTTATATTTAAAAGGCTTGGTATTGTTTAATGAAGATCAGTCTTTCTTAAACAAATTGGCATCGCAAG
ACTGGTCAGACCGTGACCCTAAAGCCAACCGCGATGCTTATCACGCTTTTGCACAATTGGTGGAACGCTACCCGAACAGT
AAATATGCACCAGATGCCACCGCACGCATGACCAAATTGGTTGACGCATTGGGCGGCAATGAAATCGCCGTTGCCCGTTA
TTACATGAAACGCGGCGCATACGTTGCAGCCATTAACCGTGCACAAAAAATTGTTCAACAGTATCAAAATACGCGTTATG
TTGAAGAATCTTTAGCCATGATGGAACTGGCCTACAAAAAACTGGAAAAACCGCAACTGGCTCAGGATACACGTCGTATT
TTGCAGCAAAATTTTCCGGAAAGCCCATTCTTAACCCATGAATGGCGCAATGGCGACATGCCTTGGTGGCGTTATTGGAA
ATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comL | Neisseria meningitidis MC58 |
82.707 |
99.625 |
0.824 |
| comL | Neisseria gonorrhoeae MS11 |
82.331 |
99.625 |
0.82 |