Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   CGZ65_RS06130 Genome accession   NZ_CP023429
Coordinates   1190581..1194204 (+) Length   1207 a.a.
NCBI ID   WP_096295232.1    Uniprot ID   -
Organism   Neisseria weixii strain 10022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185581..1199204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ65_RS06120 (CGZ65_06120) - 1188348..1189433 (-) 1086 WP_096295230.1 metallophosphoesterase -
  CGZ65_RS06125 (CGZ65_06125) - 1189577..1190479 (+) 903 WP_096295231.1 Dyp-type peroxidase -
  CGZ65_RS06130 (CGZ65_06130) recB 1190581..1194204 (+) 3624 WP_096295232.1 exodeoxyribonuclease V subunit beta Machinery gene
  CGZ65_RS06135 (CGZ65_06135) - 1194256..1194476 (-) 221 Protein_1250 YdcH family protein -
  CGZ65_RS06140 (CGZ65_06140) - 1194718..1195461 (+) 744 WP_096295233.1 nitroreductase family protein -
  CGZ65_RS06145 (CGZ65_06145) - 1195454..1195813 (+) 360 WP_096295234.1 hypothetical protein -
  CGZ65_RS06150 (CGZ65_06150) glyA 1195954..1197204 (+) 1251 WP_096295235.1 serine hydroxymethyltransferase -
  CGZ65_RS15105 - 1197689..1198474 (+) 786 WP_415906967.1 flavodoxin domain-containing protein -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 135955.03 Da        Isoelectric Point: 5.0812

>NTDB_id=247022 CGZ65_RS06130 WP_096295232.1 1190581..1194204(+) (recB) [Neisseria weixii strain 10022]
MSHSVHAFKPLSVPIQGTNLIEASAGTGKTYGIAALFTRLIVLEKMPVDKVLVVTFTKAATAELKTRLRARLDEVLQALE
SVANAAEDSDGLSQYCEREHSGDVFLYGLLQKALEQESQARLIVRLKAAIGGFDNASIYTIHGFCQRVLRDFAFLCQTQF
DVELTDDSRERLLVPAQDFWRGRVSNNPQLAKLVFKHQYTPQNMLAEIQSFTGRPYLRFRRPENLLAESQQKVADTWAKV
KANLPELEGIFWRIHPDLNGNSYRSNTFQALFNQLKHAAEQDYLPKNYDKLAMLGADLLAGKAKKGQSLDAAALADLQML
ANLGRDLTQAEEEEKNALTLLKFDLLDHINLALAEQKKSRRERTFDDLLLDVSNALQPGNPHAQALAEAVAATWQVALID
EFQDTDPLQYQIFSQIFIRQNNPLFLVGDPKQAIYSFRGADIYAYLQAAEDAQQHYTLATNFRSHAKLINGIGSLFQCKN
RPFVLENIDYNPVGAAREESRLSPGRPAIQVRWLHGSETEPMNKDALRKRAAEYCADEIAFALNEAAEGRLNFKGQPLES
GDIAVLVRTHNEGSMIAQALKSRRIQSVLLHRESVFASPEAQGLSALLDFYLNPRRTESLRFALSSVLFGYDADALYALN
QNEAELLAWIDSAERAAQEWQQKGIYTAMQHFSAEHGIETRLLSDGNNRSLTNYHQLLERLSAENEQSRSPASLHQWLLA
QINLAENGNKSESHVLRLESDEALVKIVTMHAAKGLQYPLVYCPFVWDAQDNKAHDWQILHRDGGESELLAEHQLDDGDH
IQLSDEEMAERLRLLYVALTRAEEQLNIYAAYCQDTDDNTFAYLLEGRADSTREAVKAAYESERKAGKGAAEMAMLKNNW
IKFISGQAENENTDFVFTEDAPLSAAYHSARQTDVQYQAASIPPRGFEYIRHTSFTGLSRHVKAHDSEREELQPSLDAAE
SNIRPSENVVEESDHDELSIHRFPRGTNAGLCLHDMLENLEFQTPAAEQSKQILETLTRHGFEEKWLPAVMTLLDCCRET
PISGKDTLSDIQPNERLPEMGFTLYMHDFNLAALRAWFAQPHLGLPPECLEAAQRLDFQDVQGYLNGFIDMTCLTSDGQV
CVIDYKSNYLGTNAAAYTPQAMNEAMAEHHYYLQALIYAIAVGRYFKLRGLALPQIAVRYLFLRGMNGTENGIWSWDIHA
EDLADWV

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=247022 CGZ65_RS06130 WP_096295232.1 1190581..1194204(+) (recB) [Neisseria weixii strain 10022]
ATGTCCCATTCCGTTCACGCTTTTAAACCGCTGTCGGTTCCCATCCAAGGCACCAACCTGATAGAAGCTTCTGCCGGCAC
CGGCAAAACTTACGGCATCGCCGCCCTGTTTACCCGCCTGATTGTGTTGGAAAAAATGCCGGTAGACAAAGTGTTGGTGG
TGACATTCACCAAAGCCGCCACTGCCGAACTCAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAAGCTTTAGAA
AGCGTGGCAAACGCGGCTGAAGATTCAGACGGCCTCAGTCAATATTGCGAACGCGAACACTCCGGTGATGTATTCCTCTA
CGGCTTGCTGCAAAAAGCGTTAGAACAAGAAAGCCAAGCGCGCTTGATCGTGCGCCTGAAAGCCGCTATCGGCGGTTTCG
ACAACGCTTCGATTTATACCATCCACGGTTTCTGCCAGCGCGTGTTGCGCGATTTTGCCTTTTTGTGCCAAACGCAATTT
GATGTCGAACTCACCGACGACAGCCGCGAGCGGTTGCTGGTGCCCGCACAGGATTTTTGGCGTGGACGCGTGAGCAATAA
TCCGCAGTTGGCCAAGCTGGTTTTCAAGCATCAATATACGCCGCAAAATATGTTGGCCGAGATTCAAAGCTTTACCGGCC
GCCCGTATTTGCGTTTCAGAAGGCCTGAAAACCTATTGGCCGAATCGCAGCAAAAAGTTGCCGACACGTGGGCCAAAGTC
AAAGCCAATCTGCCCGAACTGGAAGGAATCTTTTGGCGTATTCACCCCGATCTGAACGGCAACAGCTACCGTAGCAACAC
TTTCCAAGCATTGTTCAATCAGCTCAAACACGCGGCCGAACAAGATTATCTGCCGAAAAATTACGATAAATTAGCGATGC
TTGGCGCAGATTTGTTGGCCGGCAAAGCCAAAAAAGGCCAAAGCCTTGATGCCGCCGCTTTGGCTGATTTGCAGATGCTG
GCCAATCTCGGGCGCGATTTGACCCAAGCCGAGGAAGAAGAAAAAAATGCCCTCACCCTGCTCAAGTTCGACTTGCTCGA
CCACATTAACCTGGCTTTGGCCGAACAGAAAAAATCCCGCCGCGAACGCACGTTTGACGATTTATTGCTGGATGTGTCCA
ACGCATTACAACCCGGCAATCCGCACGCCCAAGCTTTGGCCGAAGCAGTCGCGGCCACTTGGCAGGTCGCCCTGATTGAC
GAATTCCAAGACACCGATCCGCTGCAATATCAGATTTTCAGCCAAATTTTTATACGTCAAAACAATCCCTTATTTTTAGT
TGGTGATCCGAAGCAAGCGATTTACAGTTTTCGCGGCGCCGATATTTATGCCTATCTGCAAGCCGCAGAAGATGCACAAC
AGCATTACACGTTAGCGACCAATTTCCGCAGCCATGCCAAGCTGATTAATGGCATAGGCTCGCTGTTTCAATGCAAAAAC
CGTCCGTTTGTATTGGAAAATATTGATTACAACCCCGTCGGCGCGGCGCGTGAAGAAAGCCGTTTGTCGCCCGGCCGTCC
CGCTATTCAGGTGCGTTGGTTACATGGCAGTGAAACCGAGCCGATGAATAAAGATGCCTTGCGCAAACGTGCCGCTGAAT
ATTGTGCCGATGAAATCGCTTTTGCTTTAAATGAAGCGGCAGAAGGCCGTCTGAATTTCAAAGGGCAGCCGCTGGAATCA
GGCGACATTGCGGTATTGGTGCGCACCCACAACGAAGGCAGCATGATTGCGCAAGCCTTGAAATCGCGCCGCATTCAAAG
CGTATTGCTGCACCGCGAATCTGTATTCGCCTCGCCTGAAGCACAAGGTTTGTCTGCTTTATTGGATTTTTATCTCAATC
CGCGCCGAACCGAATCACTGCGTTTTGCCTTAAGCAGCGTATTGTTCGGCTATGATGCCGATGCACTTTACGCACTCAAT
CAAAACGAAGCCGAACTGTTGGCGTGGATCGATTCCGCCGAGCGCGCCGCCCAAGAGTGGCAGCAAAAAGGCATTTACAC
TGCCATGCAGCATTTTTCTGCCGAGCACGGTATCGAAACCCGTCTGCTTTCAGACGGCAACAACCGAAGTCTGACCAATT
ATCATCAATTGCTGGAACGATTATCCGCAGAAAACGAGCAAAGCCGCAGCCCGGCATCGCTGCATCAATGGCTGTTGGCA
CAAATCAATCTGGCAGAAAACGGCAATAAAAGCGAAAGTCATGTTTTGCGTTTGGAAAGCGATGAAGCCTTAGTCAAAAT
CGTCACCATGCACGCGGCCAAAGGTTTGCAGTATCCGCTGGTGTATTGTCCTTTTGTATGGGACGCGCAAGACAATAAAG
CGCATGATTGGCAGATTCTACACCGCGACGGAGGGGAAAGTGAATTACTGGCCGAACACCAACTGGATGATGGCGATCAT
ATCCAATTGTCTGACGAAGAAATGGCCGAGCGCCTGCGCCTGCTCTATGTCGCCCTCACCCGCGCCGAAGAACAATTGAA
TATTTACGCCGCCTATTGCCAAGATACCGACGACAACACCTTCGCCTATCTGCTCGAAGGCCGTGCCGATAGCACGCGTG
AAGCCGTTAAAGCCGCTTATGAAAGTGAGCGCAAAGCCGGAAAAGGAGCGGCAGAAATGGCCATGCTGAAAAACAATTGG
ATAAAATTCATCAGCGGGCAGGCCGAAAATGAAAATACCGATTTTGTATTCACGGAAGATGCACCTCTCTCCGCCGCTTA
TCATTCCGCCAGACAAACCGATGTACAGTATCAAGCCGCCAGTATTCCGCCACGTGGATTTGAATACATCCGCCATACCA
GCTTTACCGGCTTGAGCCGCCACGTCAAAGCGCATGACAGCGAACGCGAAGAATTGCAACCGAGCTTGGATGCCGCAGAA
AGCAACATCAGGCCGTCTGAAAACGTGGTTGAAGAAAGCGATCATGACGAATTGAGCATCCATCGTTTCCCGCGCGGCAC
GAATGCGGGCTTGTGTCTGCACGATATGCTGGAAAATCTCGAGTTCCAAACACCTGCCGCCGAACAAAGCAAACAGATTT
TAGAAACCTTGACCCGCCACGGCTTTGAAGAAAAATGGCTGCCCGCTGTGATGACCTTGTTGGATTGTTGCCGCGAAACG
CCGATTTCAGGCAAAGATACCTTGTCGGACATTCAACCGAACGAGCGTTTACCCGAAATGGGCTTCACCCTGTATATGCA
TGATTTCAACCTTGCCGCATTACGCGCATGGTTTGCCCAGCCACATTTGGGCTTACCGCCGGAATGCCTCGAAGCGGCGC
AAAGGCTGGATTTTCAAGATGTGCAGGGCTATCTCAACGGTTTTATCGACATGACCTGCCTCACTTCAGACGGCCAAGTC
TGCGTGATTGACTACAAATCCAATTACTTGGGCACCAATGCAGCGGCTTACACTCCGCAAGCCATGAACGAAGCCATGGC
CGAACATCATTACTACCTGCAAGCCCTGATTTACGCCATCGCCGTAGGCCGCTATTTCAAGCTGCGCGGCCTTGCTTTGC
CGCAAATCGCCGTGCGCTATCTGTTTTTGCGCGGCATGAACGGCACGGAAAACGGCATTTGGTCGTGGGATATTCATGCA
GAAGATTTGGCGGATTGGGTATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(456-829)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-452)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(990-1185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.741

100

0.611

Multiple sequence alignment