Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY75_RS05890 Genome accession   NZ_CP028753
Coordinates   1220591..1221328 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A22     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1215591..1226328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY75_RS05860 (AOY75_06155) yfiL 1215749..1216114 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  AOY75_RS05865 (AOY75_06160) aroF 1216324..1217394 (+) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY75_RS05870 (AOY75_06165) tyrA 1217405..1218526 (+) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY75_RS05875 (AOY75_06170) pheA 1218569..1219729 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY75_RS05880 (AOY75_06175) pheL 1219828..1219875 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY75_RS05885 (AOY75_06180) raiA 1219979..1220320 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY75_RS05890 (AOY75_06190) comL 1220591..1221328 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY75_RS05895 (AOY75_06195) rluD 1221463..1222443 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY75_RS05900 (AOY75_06200) yfiH 1222440..1223171 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY75_RS05905 (AOY75_06205) clpC 1223301..1225874 (+) 2574 WP_240727545.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=246936 AOY75_RS05890 WP_000197686.1 1220591..1221328(-) (comL) [Escherichia coli strain A22]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=246936 AOY75_RS05890 WP_000197686.1 1220591..1221328(-) (comL) [Escherichia coli strain A22]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376