Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Bateq7PJ16_RS19455 Genome accession   NZ_CP023409
Coordinates   3628764..3629453 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623764..3634453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS19420 (Bateq7PJ16_3868) flgN 3623944..3624426 (-) 483 WP_041351273.1 flagellar protein FlgN -
  Bateq7PJ16_RS19425 (Bateq7PJ16_3869) flgM 3624442..3624708 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  Bateq7PJ16_RS19430 (Bateq7PJ16_3870) yvyF 3624789..3625208 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  Bateq7PJ16_RS19435 comFC 3625282..3626004 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  Bateq7PJ16_RS19440 (Bateq7PJ16_3872) comFB 3625968..3626264 (-) 297 WP_015483764.1 late competence protein ComFB -
  Bateq7PJ16_RS19445 (Bateq7PJ16_3873) comFA 3626324..3627715 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  Bateq7PJ16_RS19450 (Bateq7PJ16_3874) fakBA 3627821..3628666 (-) 846 WP_014481053.1 DegV family protein -
  Bateq7PJ16_RS19455 (Bateq7PJ16_3875) degU 3628764..3629453 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  Bateq7PJ16_RS19460 (Bateq7PJ16_3876) degS 3629536..3630693 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  Bateq7PJ16_RS19465 (Bateq7PJ16_3877) yvyE 3630910..3631563 (+) 654 WP_003227979.1 YigZ family protein -
  Bateq7PJ16_RS19470 (Bateq7PJ16_3878) tagV 3631563..3632738 (+) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  Bateq7PJ16_RS19475 (Bateq7PJ16_3879) tagO 3632811..3633887 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=246823 Bateq7PJ16_RS19455 WP_014481054.1 3628764..3629453(-) (degU) [Bacillus subtilis strain 7PJ-16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=246823 Bateq7PJ16_RS19455 WP_014481054.1 3628764..3629453(-) (degU) [Bacillus subtilis strain 7PJ-16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment