Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Bateq7PJ16_RS19445 Genome accession   NZ_CP023409
Coordinates   3626324..3627715 (-) Length   463 a.a.
NCBI ID   WP_072173458.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621324..3632715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS19410 (Bateq7PJ16_3866) flgL 3621495..3622391 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  Bateq7PJ16_RS19415 (Bateq7PJ16_3867) flgK 3622402..3623925 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  Bateq7PJ16_RS19420 (Bateq7PJ16_3868) flgN 3623944..3624426 (-) 483 WP_041351273.1 flagellar protein FlgN -
  Bateq7PJ16_RS19425 (Bateq7PJ16_3869) flgM 3624442..3624708 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  Bateq7PJ16_RS19430 (Bateq7PJ16_3870) yvyF 3624789..3625208 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  Bateq7PJ16_RS19435 comFC 3625282..3626004 (-) 723 WP_124047882.1 comF operon protein ComFC Machinery gene
  Bateq7PJ16_RS19440 (Bateq7PJ16_3872) comFB 3625968..3626264 (-) 297 WP_015483764.1 late competence protein ComFB -
  Bateq7PJ16_RS19445 (Bateq7PJ16_3873) comFA 3626324..3627715 (-) 1392 WP_072173458.1 ATP-dependent helicase ComFA Machinery gene
  Bateq7PJ16_RS19450 (Bateq7PJ16_3874) fakBA 3627821..3628666 (-) 846 WP_014481053.1 DegV family protein -
  Bateq7PJ16_RS19455 (Bateq7PJ16_3875) degU 3628764..3629453 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  Bateq7PJ16_RS19460 (Bateq7PJ16_3876) degS 3629536..3630693 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  Bateq7PJ16_RS19465 (Bateq7PJ16_3877) yvyE 3630910..3631563 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52542.60 Da        Isoelectric Point: 9.9687

>NTDB_id=246822 Bateq7PJ16_RS19445 WP_072173458.1 3626324..3627715(-) (comFA) [Bacillus subtilis strain 7PJ-16]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=246822 Bateq7PJ16_RS19445 WP_072173458.1 3626324..3627715(-) (comFA) [Bacillus subtilis strain 7PJ-16]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment