Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Bateq7PJ16_RS13580 Genome accession   NZ_CP023409
Coordinates   2516914..2518644 (-) Length   576 a.a.
NCBI ID   WP_072173936.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2511914..2523644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS13555 (Bateq7PJ16_2686) yqiH 2511971..2512264 (-) 294 WP_003230284.1 lipoprotein -
  Bateq7PJ16_RS13560 (Bateq7PJ16_2687) - 2512572..2512724 (+) 153 WP_014480226.1 hypothetical protein -
  Bateq7PJ16_RS13565 (Bateq7PJ16_2688) yqiG 2512797..2513915 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  Bateq7PJ16_RS13570 (Bateq7PJ16_2690) spo0A 2514380..2515183 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  Bateq7PJ16_RS13575 (Bateq7PJ16_2691) spoIVB 2515459..2516739 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  Bateq7PJ16_RS13580 (Bateq7PJ16_2692) recN 2516914..2518644 (-) 1731 WP_072173936.1 DNA repair protein RecN Machinery gene
  Bateq7PJ16_RS13585 (Bateq7PJ16_2693) argR 2518681..2519130 (-) 450 WP_014114358.1 arginine repressor ArgR -
  Bateq7PJ16_RS13590 (Bateq7PJ16_2694) yqxC 2519228..2520073 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  Bateq7PJ16_RS13595 (Bateq7PJ16_2695) dxs 2520070..2521971 (-) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  Bateq7PJ16_RS13600 (Bateq7PJ16_2696) ispA 2522146..2523036 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  Bateq7PJ16_RS13605 (Bateq7PJ16_2697) xseB 2523026..2523280 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64522.43 Da        Isoelectric Point: 4.8041

>NTDB_id=246793 Bateq7PJ16_RS13580 WP_072173936.1 2516914..2518644(-) (recN) [Bacillus subtilis strain 7PJ-16]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDKQLQEERQEISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=246793 Bateq7PJ16_RS13580 WP_072173936.1 2516914..2518644(-) (recN) [Bacillus subtilis strain 7PJ-16]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGATACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATAAACAGCTCC
AAGAAGAGCGCCAGGAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCTTCAGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCTTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTCGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGTTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTCTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGACGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993

Multiple sequence alignment