Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   CMV25_RS05035 Genome accession   NZ_CP023392
Coordinates   1015211..1016449 (-) Length   412 a.a.
NCBI ID   WP_167372341.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1010211..1021449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS11355 - 1010535..1010687 (-) 153 WP_157738499.1 hypothetical protein -
  CMV25_RS05020 (CMV25_05020) - 1011079..1013721 (-) 2643 WP_096039774.1 C47 family peptidase -
  CMV25_RS05025 (CMV25_05025) - 1013732..1014154 (-) 423 WP_096039775.1 hypothetical protein -
  CMV25_RS05030 (CMV25_05030) - 1014406..1015155 (+) 750 WP_096039776.1 AraC family transcriptional regulator -
  CMV25_RS05035 (CMV25_05035) eeP 1015211..1016449 (-) 1239 WP_167372341.1 RIP metalloprotease RseP Regulator
  CMV25_RS05040 (CMV25_05040) - 1016554..1017729 (-) 1176 WP_096039778.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CMV25_RS05045 (CMV25_05045) - 1017833..1018627 (-) 795 WP_096039779.1 phosphatidate cytidylyltransferase -
  CMV25_RS05050 (CMV25_05050) - 1018624..1019370 (-) 747 WP_096039780.1 isoprenyl transferase -
  CMV25_RS05055 (CMV25_05055) yajC 1019584..1019940 (-) 357 WP_061774545.1 preprotein translocase subunit YajC -
  CMV25_RS05060 (CMV25_05060) - 1020129..1020875 (+) 747 WP_061774546.1 DUF975 family protein -

Sequence


Protein


Download         Length: 412 a.a.        Molecular weight: 45169.67 Da        Isoelectric Point: 6.7654

>NTDB_id=246599 CMV25_RS05035 WP_167372341.1 1015211..1016449(-) (eeP) [Lactococcus raffinolactis strain WiKim0068]
MQSLVTFIIIFGIIVCVHEYGHLFFAKKSGILVREFSIGMGPKIYAHQAKDGTLYTIRMLPLGGYVRMAGWGEDETEIKT
GAPVSLTLDVQNQTVTRINLSDKVQFGQALPMLVTAYDFEKALTITGEVNGEVVTYAVDHDATVVEEDGTELRIAPLDVQ
YQSASLPGRMMTNFAGPLNNFILGVVAFVLVAFMQGGVQDLNTNQITVSDHNLPAYQAGLRTGDKVETVNGVPISDWSSL
SKQIGESDGKAIQVKTDRKTLTITPKKQEKSYIIGITPFLKTGFVDKLTGGLKEAWTSAFAIINALKDLILHPDINKLGG
PVAMYRMSGDAAREGITTVIRFMALLSINLGIFNLIPIPALDGGKIVMNIIEAIRRKPMKQEYESIITLVGVGIMVVLMI
AVTWNDIWRLFR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=246599 CMV25_RS05035 WP_167372341.1 1015211..1016449(-) (eeP) [Lactococcus raffinolactis strain WiKim0068]
GTGCAAAGTTTAGTCACATTTATCATCATTTTCGGTATTATTGTCTGTGTCCATGAGTATGGTCACCTGTTTTTTGCTAA
AAAATCAGGGATTTTGGTGCGGGAATTTTCGATTGGTATGGGACCAAAAATCTATGCACATCAAGCTAAAGATGGCACCC
TTTATACGATTAGAATGTTGCCTCTGGGTGGTTATGTTCGCATGGCTGGCTGGGGTGAAGATGAAACTGAGATTAAAACT
GGTGCACCTGTGAGCTTGACATTAGATGTCCAAAATCAGACGGTGACACGTATCAATCTCAGTGATAAAGTGCAGTTTGG
ACAAGCGCTTCCGATGCTTGTCACAGCTTACGACTTCGAAAAGGCTTTAACCATTACCGGCGAGGTCAATGGGGAAGTTG
TGACGTATGCGGTGGATCATGATGCGACGGTTGTTGAGGAAGATGGTACAGAGCTGCGCATTGCGCCTTTAGATGTGCAA
TATCAGAGTGCGAGTCTGCCTGGTAGAATGATGACGAACTTTGCAGGACCGCTCAATAACTTTATTTTGGGCGTGGTGGC
TTTTGTTCTAGTTGCCTTTATGCAAGGTGGCGTGCAAGATTTGAATACCAATCAAATCACGGTGTCTGATCACAATTTAC
CGGCTTATCAGGCTGGTTTACGGACGGGTGATAAAGTTGAGACGGTTAATGGTGTGCCAATTTCTGATTGGTCTAGCTTA
TCAAAGCAAATCGGTGAATCAGATGGTAAGGCCATTCAAGTTAAGACGGACCGCAAAACACTGACGATTACGCCTAAGAA
ACAAGAGAAAAGCTATATTATAGGGATTACACCGTTTTTAAAAACAGGATTCGTAGACAAATTAACAGGTGGTCTGAAAG
AGGCGTGGACATCTGCTTTTGCGATTATTAATGCTTTGAAAGATTTAATTTTACATCCAGATATTAATAAATTAGGTGGA
CCAGTTGCCATGTATCGGATGTCTGGTGATGCGGCGCGTGAAGGTATCACGACGGTTATCAGATTTATGGCACTTCTATC
CATTAACTTAGGAATTTTCAATCTGATTCCGATTCCTGCCCTGGATGGTGGTAAGATTGTCATGAATATCATTGAAGCGA
TTCGTCGTAAACCGATGAAACAAGAATATGAAAGTATCATTACTCTTGTAGGTGTGGGCATCATGGTTGTCTTGATGATT
GCGGTGACTTGGAATGATATTTGGCGGTTGTTTCGGTAA

Domains


Predicted by InterproScan.

(6-398)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

61.045

100

0.624

  eeP Streptococcus thermophilus LMD-9

60.808

100

0.621


Multiple sequence alignment