Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY80_RS17175 Genome accession   NZ_CP028748
Coordinates   3573735..3574472 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A27     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3568735..3579472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY80_RS17160 (AOY80_18245) clpC 3569189..3571762 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY80_RS17165 (AOY80_18250) yfiH 3571892..3572623 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AOY80_RS17170 (AOY80_18255) rluD 3572620..3573600 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY80_RS17175 (AOY80_18260) comL 3573735..3574472 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY80_RS17180 (AOY80_18270) raiA 3574743..3575084 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY80_RS17185 (AOY80_18275) pheL 3575188..3575235 (+) 48 WP_010723158.1 phe operon leader peptide -
  AOY80_RS17190 (AOY80_18280) pheA 3575334..3576494 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY80_RS17195 (AOY80_18285) tyrA 3576537..3577658 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY80_RS17200 (AOY80_18290) aroF 3577669..3578739 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY80_RS17205 (AOY80_18295) yfiL 3578949..3579314 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=246549 AOY80_RS17175 WP_000197686.1 3573735..3574472(+) (comL) [Escherichia coli strain A27]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=246549 AOY80_RS17175 WP_000197686.1 3573735..3574472(+) (comL) [Escherichia coli strain A27]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376