Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY84_RS17510 Genome accession   NZ_CP028744
Coordinates   3636238..3636975 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A31     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631238..3641975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY84_RS17495 (AOY84_18600) clpC 3631692..3634265 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY84_RS17500 (AOY84_18605) yfiH 3634395..3635126 (-) 732 WP_001543096.1 purine nucleoside phosphorylase YfiH -
  AOY84_RS17505 (AOY84_18610) rluD 3635123..3636103 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY84_RS17510 (AOY84_18615) comL 3636238..3636975 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY84_RS17515 (AOY84_18625) raiA 3637246..3637587 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY84_RS17520 (AOY84_18630) pheL 3637691..3637738 (+) 48 WP_010723158.1 phe operon leader peptide -
  AOY84_RS17525 (AOY84_18635) pheA 3637837..3638997 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY84_RS17530 (AOY84_18640) tyrA 3639040..3640161 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY84_RS17535 (AOY84_18645) aroF 3640172..3641242 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY84_RS17540 (AOY84_18650) yfiL 3641451..3641816 (+) 366 WP_024166617.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=246238 AOY84_RS17510 WP_000197686.1 3636238..3636975(+) (comL) [Escherichia coli strain A31]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=246238 AOY84_RS17510 WP_000197686.1 3636238..3636975(+) (comL) [Escherichia coli strain A31]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376