Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY85_RS16890 Genome accession   NZ_CP028743
Coordinates   3506573..3507310 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A32     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3501573..3512310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY85_RS16875 (AOY85_17905) clpC 3502027..3504600 (-) 2574 WP_240727545.1 ATP-dependent chaperone ClpB Regulator
  AOY85_RS16880 (AOY85_17910) yfiH 3504730..3505461 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY85_RS16885 (AOY85_17915) rluD 3505458..3506438 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY85_RS16890 (AOY85_17920) comL 3506573..3507310 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY85_RS16895 (AOY85_17930) raiA 3507581..3507922 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY85_RS16900 (AOY85_17935) pheL 3508026..3508073 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY85_RS16905 (AOY85_17940) pheA 3508172..3509332 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY85_RS16910 (AOY85_17945) tyrA 3509375..3510496 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY85_RS16915 (AOY85_17950) aroF 3510507..3511577 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY85_RS16920 (AOY85_17955) yfiL 3511787..3512152 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=246155 AOY85_RS16890 WP_000197686.1 3506573..3507310(+) (comL) [Escherichia coli strain A32]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=246155 AOY85_RS16890 WP_000197686.1 3506573..3507310(+) (comL) [Escherichia coli strain A32]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment