Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NTHI_RS02055 Genome accession   NC_007146
Coordinates   413621..414235 (-) Length   204 a.a.
NCBI ID   WP_011271983.1    Uniprot ID   Q4QNM5
Organism   Haemophilus influenzae 86-028NP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 408621..419235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI_RS02030 (NTHI0426) proC 409189..410004 (+) 816 WP_011271979.1 pyrroline-5-carboxylate reductase -
  NTHI_RS02035 (NTHI0427) - 410004..411170 (+) 1167 WP_011271980.1 3-phenylpropionate MFS transporter -
  NTHI_RS02040 (NTHI0428) xerD 411201..412094 (+) 894 WP_011271981.1 site-specific tyrosine recombinase XerD -
  NTHI_RS02045 (NTHI0429) - 412267..412554 (+) 288 WP_011271982.1 DUF5339 domain-containing protein -
  NTHI_RS02050 (NTHI0430) ruvB 412606..413613 (-) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NTHI_RS02055 (NTHI0431) ruvA 413621..414235 (-) 615 WP_011271983.1 Holliday junction branch migration protein RuvA Machinery gene
  NTHI_RS02060 (NTHI0432) ruvC 414298..414870 (-) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  NTHI_RS02065 (NTHI0433) - 414917..415657 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NTHI_RS02070 (NTHI0434) nudB 415669..416142 (-) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  NTHI_RS02075 (NTHI0435) aspS 416164..417930 (-) 1767 WP_011271986.1 aspartate--tRNA ligase -
  NTHI_RS02080 (NTHI0436) - 418149..418667 (+) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22561.30 Da        Isoelectric Point: 6.5030

>NTDB_id=24608 NTHI_RS02055 WP_011271983.1 413621..414235(-) (ruvA) [Haemophilus influenzae 86-028NP]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=24608 NTHI_RS02055 WP_011271983.1 413621..414235(-) (ruvA) [Haemophilus influenzae 86-028NP]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTTGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCTTACGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCATAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.885

100

0.368

Multiple sequence alignment