Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CLI97_RS07925 Genome accession   NZ_CP023320
Coordinates   1473709..1474398 (-) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468709..1479398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS07890 (CLI97_01560) fliW 1468800..1469231 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  CLI97_RS07895 (CLI97_01561) - 1469261..1469830 (-) 570 WP_003151397.1 DUF6470 family protein -
  CLI97_RS07900 (CLI97_01562) flgL 1469921..1470838 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  CLI97_RS07905 (CLI97_01563) flgK 1470850..1472367 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  CLI97_RS07910 (CLI97_01564) - 1472383..1472865 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CLI97_RS07915 (CLI97_01565) flgM 1472880..1473146 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CLI97_RS07920 (CLI97_01566) - 1473216..1473635 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  CLI97_RS07925 (CLI97_01567) comFC 1473709..1474398 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  CLI97_RS07930 (CLI97_01568) - 1474404..1474688 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  CLI97_RS07935 (CLI97_01569) comFA 1474746..1476131 (-) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  CLI97_RS07940 (CLI97_01570) - 1476239..1477087 (-) 849 WP_003151387.1 DegV family protein -
  CLI97_RS07945 (CLI97_01571) degU 1477185..1477874 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CLI97_RS07950 (CLI97_01572) degS 1477951..1479114 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=246033 CLI97_RS07925 WP_202980098.1 1473709..1474398(-) (comFC) [Bacillus velezensis strain SCGB]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=246033 CLI97_RS07925 WP_202980098.1 1473709..1474398(-) (comFC) [Bacillus velezensis strain SCGB]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment