Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CLI97_RS05920 Genome accession   NZ_CP023320
Coordinates   1088210..1088854 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SCGB     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083210..1093854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS05885 (CLI97_01169) - 1084395..1084826 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  CLI97_RS05890 (CLI97_01170) - 1084826..1085167 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  CLI97_RS05895 (CLI97_01171) - 1085160..1086641 (+) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  CLI97_RS05900 (CLI97_01172) - 1086647..1087123 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  CLI97_RS05905 (CLI97_01173) - 1087123..1087407 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  CLI97_RS05910 (CLI97_01174) mnhG 1087391..1087765 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CLI97_RS05915 (CLI97_01175) - 1087805..1088188 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  CLI97_RS05920 (CLI97_01176) comA 1088210..1088854 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  CLI97_RS05925 (CLI97_01177) comP 1088935..1091226 (-) 2292 WP_094247540.1 histidine kinase Regulator
  CLI97_RS05930 (CLI97_01178) comX 1091238..1091402 (-) 165 WP_007613432.1 competence pheromone ComX -
  CLI97_RS05935 (CLI97_01179) - 1091402..1092313 (-) 912 WP_031378407.1 polyprenyl synthetase family protein -
  CLI97_RS05940 (CLI97_01180) degQ 1092465..1092605 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CLI97_RS05950 (CLI97_01181) - 1093070..1093411 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=246028 CLI97_RS05920 WP_003152052.1 1088210..1088854(-) (comA) [Bacillus velezensis strain SCGB]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=246028 CLI97_RS05920 WP_003152052.1 1088210..1088854(-) (comA) [Bacillus velezensis strain SCGB]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment