Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SSP_RS03890 Genome accession   NC_007350
Coordinates   814904..815323 (+) Length   139 a.a.
NCBI ID   WP_011302684.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 809904..820323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSP_RS03860 (SSP0781) atpD 810021..811433 (+) 1413 WP_002482726.1 F0F1 ATP synthase subunit beta -
  SSP_RS03865 (SSP0782) - 811453..811857 (+) 405 WP_002482727.1 F0F1 ATP synthase subunit epsilon -
  SSP_RS03870 (SSP0783) - 812119..812352 (+) 234 WP_011302682.1 DUF1146 family protein -
  SSP_RS03875 (SSP0784) murA 812459..813724 (+) 1266 WP_011302683.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSP_RS03880 (SSP0785) fabZ 813779..814216 (+) 438 WP_002482729.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SSP_RS03885 (SSP0786) - 814273..814713 (-) 441 WP_002482730.1 YwpF-like family protein -
  SSP_RS03890 (SSP0787) ssb 814904..815323 (+) 420 WP_011302684.1 single-stranded DNA-binding protein Machinery gene
  SSP_RS03895 (SSP0788) - 815749..816465 (+) 717 WP_011302685.1 transglycosylase family protein -
  SSP_RS03900 (SSP0789) tenA 816772..817461 (+) 690 WP_011302686.1 thiaminase II -
  SSP_RS03905 (SSP0790) thiD 817454..818275 (+) 822 WP_011302687.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SSP_RS03910 (SSP0791) thiM 818268..819059 (+) 792 WP_011302688.1 hydroxyethylthiazole kinase -
  SSP_RS03915 (SSP0792) thiE 819059..819697 (+) 639 WP_011302689.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16059.43 Da        Isoelectric Point: 7.7651

>NTDB_id=24593 SSP_RS03890 WP_011302684.1 814904..815323(+) (ssb) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
MINNIVIVGRLTKDPKIYDKEEKKLATFCVAVSRNYKDKNQTPVCDYLFCKAFGKMATNIEKYTKQGSLVGITGQMQSHK
YEKEGQTHFVSEILIESIKFMSPQNKDKNDLLFEPFPLEHSQNAFKDINVQNNDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=24593 SSP_RS03890 WP_011302684.1 814904..815323(+) (ssb) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292]
ATGATTAATAACATTGTTATCGTAGGGCGACTAACTAAGGACCCTAAAATATATGATAAGGAGGAGAAAAAATTAGCTAC
ATTTTGTGTAGCTGTATCAAGGAACTATAAAGATAAGAATCAAACCCCGGTATGTGATTATTTATTTTGTAAAGCATTTG
GAAAAATGGCAACAAACATTGAGAAATATACGAAGCAAGGCTCACTTGTAGGTATAACAGGCCAAATGCAATCACATAAA
TATGAAAAAGAAGGTCAGACGCATTTTGTATCAGAAATACTTATTGAATCAATTAAATTCATGTCTCCACAAAACAAAGA
TAAAAATGATTTACTTTTTGAACCATTCCCGCTAGAGCATTCCCAAAATGCATTTAAAGACATTAACGTACAAAATAATG
ATATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597

Multiple sequence alignment