Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CMV05_RS16585 Genome accession   NZ_CP023311
Coordinates   213936..215117 (-) Length   393 a.a.
NCBI ID   WP_017050024.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 208936..220117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS16580 (CMV05_16580) cqsS 211798..213849 (+) 2052 WP_096036876.1 hybrid sensor histidine kinase/response regulator Regulator
  CMV05_RS16585 (CMV05_16585) cqsA 213936..215117 (-) 1182 WP_017050024.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CMV05_RS16590 (CMV05_16590) - 215317..216291 (-) 975 WP_096036877.1 TDT family transporter -
  CMV05_RS16595 (CMV05_16595) clcA 216440..217837 (-) 1398 WP_013868492.1 H(+)/Cl(-) exchange transporter ClcA -
  CMV05_RS16600 (CMV05_16600) - 218329..219315 (+) 987 WP_096036878.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43529.33 Da        Isoelectric Point: 6.6121

>NTDB_id=245887 CMV05_RS16585 WP_017050024.1 213936..215117(-) (cqsA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=245887 CMV05_RS16585 WP_017050024.1 213936..215117(-) (cqsA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACACCTAGTCCTAGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTGAAAAACGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACAGCCTTGTTGCAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGATT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGCTATGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTACAAAAACTGATCGCTCGACACGGCCCAGGGCTCATCGTGGTTGATTCGATTTACAGCACTATCGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCAAAA
ACATTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATCGCGCTAGAAACAGGAGATGAGCGAAATACAGAAAAAGTTCGCGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGATACCATATTAACTGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.734

98.473

0.677

Multiple sequence alignment