Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CMV05_RS09940 Genome accession   NZ_CP023310
Coordinates   2126116..2127522 (-) Length   468 a.a.
NCBI ID   WP_026028245.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2111219..2148009 2126116..2127522 within 0


Gene organization within MGE regions


Location: 2111219..2148009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS09850 (CMV05_09850) - 2111219..2112388 (-) 1170 WP_076611988.1 ISL3-like element ISVa10 family transposase -
  CMV05_RS09855 (CMV05_09855) - 2112690..2113283 (+) 594 WP_216641733.1 hypothetical protein -
  CMV05_RS09860 (CMV05_09860) - 2113333..2114364 (+) 1032 WP_026027704.1 IS630-like element ISVa15 family transposase -
  CMV05_RS09865 (CMV05_09865) - 2114473..2115204 (+) 732 WP_194554334.1 hypothetical protein -
  CMV05_RS09870 (CMV05_09870) - 2115209..2115661 (+) 453 WP_096036503.1 hypothetical protein -
  CMV05_RS09875 (CMV05_09875) - 2115745..2117253 (+) 1509 WP_216641734.1 AAA family ATPase -
  CMV05_RS09885 (CMV05_09885) - 2118411..2119430 (+) 1020 WP_235653386.1 3'-5' exonuclease -
  CMV05_RS09890 (CMV05_09890) - 2119539..2120708 (+) 1170 WP_076611988.1 ISL3-like element ISVa10 family transposase -
  CMV05_RS09895 (CMV05_09895) - 2120724..2120954 (+) 231 WP_214656341.1 hypothetical protein -
  CMV05_RS09900 (CMV05_09900) - 2121174..2121767 (+) 594 Protein_1847 GGDEF domain-containing protein -
  CMV05_RS09905 (CMV05_09905) moaE 2121764..2122234 (-) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -
  CMV05_RS09910 (CMV05_09910) moaD 2122237..2122482 (-) 246 WP_096036504.1 molybdopterin synthase sulfur carrier subunit -
  CMV05_RS09915 (CMV05_09915) moaC 2122475..2122975 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CMV05_RS09920 (CMV05_09920) moaB 2122986..2123498 (-) 513 WP_096036505.1 molybdenum cofactor biosynthesis protein B -
  CMV05_RS09925 (CMV05_09925) moaA 2123566..2124555 (-) 990 WP_096036795.1 GTP 3',8-cyclase MoaA -
  CMV05_RS09930 (CMV05_09930) - 2124867..2125757 (+) 891 WP_013857260.1 YvcK family protein -
  CMV05_RS09935 (CMV05_09935) luxU 2125773..2126111 (-) 339 WP_088721080.1 quorum-sensing phosphorelay protein LuxU -
  CMV05_RS09940 (CMV05_09940) luxO 2126116..2127522 (-) 1407 WP_026028245.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CMV05_RS09945 (CMV05_09945) uvrB 2127765..2129795 (-) 2031 WP_096036796.1 excinuclease ABC subunit UvrB -
  CMV05_RS09955 (CMV05_09955) - 2130583..2131248 (+) 666 WP_234913517.1 integrase arm-type DNA-binding domain-containing protein -
  CMV05_RS09960 (CMV05_09960) - 2131325..2131645 (+) 321 WP_019283194.1 hypothetical protein -
  CMV05_RS09965 (CMV05_09965) tnpB 2131642..2131995 (+) 354 WP_019283195.1 IS66 family insertion sequence element accessory protein TnpB -
  CMV05_RS09970 (CMV05_09970) - 2132055..2133587 (+) 1533 WP_096036126.1 IS66-like element ISVa11 family transposase -
  CMV05_RS09975 (CMV05_09975) - 2133633..2134046 (+) 414 Protein_1861 tyrosine-type recombinase/integrase -
  CMV05_RS09980 (CMV05_09980) - 2134142..2135380 (+) 1239 WP_086558351.1 IS256-like element ISVa19 family transposase -
  CMV05_RS09990 (CMV05_09990) - 2135757..2136602 (-) 846 WP_096036507.1 hypothetical protein -
  CMV05_RS09995 (CMV05_09995) - 2136592..2137407 (-) 816 WP_172859015.1 DUF3696 domain-containing protein -
  CMV05_RS10000 (CMV05_10000) - 2137505..2138682 (+) 1178 WP_096036032.1 IS3 family transposase -
  CMV05_RS10005 (CMV05_10005) - 2138601..2139245 (-) 645 WP_096036509.1 DUF262 domain-containing protein -
  CMV05_RS10010 (CMV05_10010) - 2139245..2139460 (-) 216 Protein_1867 hypothetical protein -
  CMV05_RS10015 (CMV05_10015) - 2139579..2140229 (+) 651 WP_096036510.1 phospholipase D family protein -
  CMV05_RS10020 (CMV05_10020) - 2140213..2140743 (+) 531 WP_096036511.1 hypothetical protein -
  CMV05_RS10025 (CMV05_10025) - 2140788..2142689 (-) 1902 WP_172859016.1 DNA/RNA helicase domain-containing protein -
  CMV05_RS10030 (CMV05_10030) - 2142702..2143103 (-) 402 WP_096036512.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  CMV05_RS10035 (CMV05_10035) - 2143100..2143936 (-) 837 WP_096036513.1 HNH endonuclease -
  CMV05_RS10040 (CMV05_10040) - 2143945..2145972 (-) 2028 WP_096036798.1 hypothetical protein -
  CMV05_RS10045 (CMV05_10045) - 2146111..2146986 (+) 876 WP_096036514.1 YafY family protein -
  CMV05_RS10050 (CMV05_10050) - 2146978..2148009 (-) 1032 WP_026027704.1 IS630-like element ISVa15 family transposase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52144.54 Da        Isoelectric Point: 6.0305

>NTDB_id=245875 CMV05_RS09940 WP_026028245.1 2126116..2127522(-) (luxO) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTDTRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=245875 CMV05_RS09940 WP_026028245.1 2126116..2127522(-) (luxO) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACTCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATCGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGTGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAACCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGCACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCAATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTACTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCCGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCGCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGATACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
ACAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.832

96.581

0.848
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment