Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY89_RS07910 Genome accession   NZ_CP028739
Coordinates   1604434..1605171 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A36     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1599434..1610171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY89_RS07880 (AOY89_08360) - 1600730..1601839 (+) 1110 WP_240745690.1 phage late control D family protein -
  AOY89_RS07885 (AOY89_08365) - 1601882..1602142 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  AOY89_RS07890 (AOY89_08375) - 1602334..1602474 (+) 141 WP_032140709.1 Hok/Gef family protein -
  AOY89_RS07895 (AOY89_08380) - 1602724..1602921 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  AOY89_RS07900 (AOY89_08385) - 1602866..1603672 (+) 807 WP_240745691.1 site-specific DNA-methyltransferase -
  AOY89_RS07905 (AOY89_08390) raiA 1603823..1604164 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY89_RS07910 (AOY89_08400) comL 1604434..1605171 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY89_RS07915 (AOY89_08405) rluD 1605306..1606286 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY89_RS07920 (AOY89_08410) yfiH 1606283..1607014 (+) 732 WP_240745692.1 purine nucleoside phosphorylase YfiH -
  AOY89_RS07925 (AOY89_08415) clpC 1607144..1609717 (+) 2574 WP_001314061.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=245805 AOY89_RS07910 WP_000197686.1 1604434..1605171(-) (comL) [Escherichia coli strain A36]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=245805 AOY89_RS07910 WP_000197686.1 1604434..1605171(-) (comL) [Escherichia coli strain A36]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376