Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CLJ08_RS04965 Genome accession   NZ_CP023299
Coordinates   1008893..1009528 (-) Length   211 a.a.
NCBI ID   WP_084942595.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain BS011     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003893..1014528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLJ08_RS04935 (CLJ08_04935) murB 1004997..1006016 (-) 1020 WP_062573280.1 UDP-N-acetylmuramate dehydrogenase -
  CLJ08_RS04940 (CLJ08_04940) - 1006013..1006477 (-) 465 WP_062573279.1 low molecular weight protein-tyrosine-phosphatase -
  CLJ08_RS04945 (CLJ08_04945) kdsB 1006477..1007241 (-) 765 WP_096048370.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CLJ08_RS04950 (CLJ08_04950) - 1007238..1007423 (-) 186 WP_011532874.1 Trm112 family protein -
  CLJ08_RS04955 (CLJ08_04955) lpxK 1007458..1008462 (-) 1005 WP_062573277.1 tetraacyldisaccharide 4'-kinase -
  CLJ08_RS04960 (CLJ08_04960) - 1008462..1008896 (-) 435 WP_028690977.1 ExbD/TolR family protein -
  CLJ08_RS04965 (CLJ08_04965) exbB 1008893..1009528 (-) 636 WP_084942595.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CLJ08_RS04970 (CLJ08_04970) comA 1009680..1011896 (-) 2217 WP_096048371.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CLJ08_RS04975 (CLJ08_04975) - 1012041..1012682 (+) 642 WP_157763493.1 DUF2062 domain-containing protein -
  CLJ08_RS04980 (CLJ08_04980) - 1012566..1013345 (-) 780 WP_028690974.1 ABC transporter permease -
  CLJ08_RS04985 (CLJ08_04985) - 1013342..1014274 (-) 933 WP_062573273.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.17 Da        Isoelectric Point: 7.3616

>NTDB_id=245763 CLJ08_RS04965 WP_084942595.1 1008893..1009528(-) (exbB) [Pseudomonas mosselii strain BS011]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=245763 CLJ08_RS04965 WP_084942595.1 1008893..1009528(-) (exbB) [Pseudomonas mosselii strain BS011]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCTCGGGTCATCCACGAGTTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment