Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CLM75_RS26215 Genome accession   NZ_CP023272
Coordinates   5695375..5695782 (-) Length   135 a.a.
NCBI ID   WP_034109939.1    Uniprot ID   -
Organism   Pseudomonas lurida strain MYb11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5690375..5700782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM75_RS26200 (CLM75_26035) - 5692378..5694429 (-) 2052 WP_105163006.1 methyl-accepting chemotaxis protein -
  CLM75_RS26205 (CLM75_26040) - 5694426..5694950 (-) 525 WP_034109936.1 chemotaxis protein CheW -
  CLM75_RS26210 (CLM75_26045) pilH 5694963..5695328 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  CLM75_RS26215 (CLM75_26050) pilG 5695375..5695782 (-) 408 WP_034109939.1 twitching motility response regulator PilG Regulator
  CLM75_RS26220 (CLM75_26055) gshB 5696022..5696993 (+) 972 WP_105163007.1 glutathione synthase -
  CLM75_RS26225 (CLM75_26060) - 5697101..5698006 (+) 906 WP_034110678.1 energy transducer TonB -
  CLM75_RS26230 (CLM75_26065) - 5698119..5698688 (+) 570 WP_034110680.1 YqgE/AlgH family protein -
  CLM75_RS26235 (CLM75_26070) ruvX 5698688..5699125 (+) 438 WP_005792259.1 Holliday junction resolvase RuvX -
  CLM75_RS26240 (CLM75_26075) pyrR 5699198..5699704 (+) 507 WP_069078480.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  CLM75_RS26245 (CLM75_26080) - 5699729..5700733 (+) 1005 WP_025857712.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14920.43 Da        Isoelectric Point: 7.3842

>NTDB_id=245679 CLM75_RS26215 WP_034109939.1 5695375..5695782(-) (pilG) [Pseudomonas lurida strain MYb11]
MEQHSNALRVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
SIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=245679 CLM75_RS26215 WP_034109939.1 5695375..5695782(-) (pilG) [Pseudomonas lurida strain MYb11]
ATGGAACAGCATTCCAACGCCTTGAGAGTGATGGTGATCGACGATTCGAAGACGATCCGCCGTACCGCTGAAACCTTGTT
GAAGAATGTGGGGTGCGATGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCCGGATTGTTGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGATCCCGGTGATCATGTTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTACGTGCCTGCTTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.291

94.074

0.652
  vicR Streptococcus mutans UA159

38.889

93.333

0.363

Multiple sequence alignment