Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY94_RS17800 Genome accession   NZ_CP028735
Coordinates   3706015..3706752 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A41     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3701015..3711752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY94_RS17785 (AOY94_18880) clpC 3701469..3704042 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY94_RS17790 (AOY94_18885) yfiH 3704172..3704903 (-) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  AOY94_RS17795 (AOY94_18890) rluD 3704900..3705880 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY94_RS17800 (AOY94_18895) comL 3706015..3706752 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY94_RS17805 (AOY94_18905) raiA 3707023..3707364 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY94_RS17810 (AOY94_18910) pheL 3707468..3707515 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY94_RS17815 (AOY94_18915) pheA 3707614..3708774 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY94_RS17820 (AOY94_18920) tyrA 3708817..3709938 (-) 1122 WP_000225201.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY94_RS17825 (AOY94_18925) aroF 3709949..3711019 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY94_RS17830 (AOY94_18930) yfiL 3711229..3711594 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=245590 AOY94_RS17800 WP_000197686.1 3706015..3706752(+) (comL) [Escherichia coli strain A41]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=245590 AOY94_RS17800 WP_000197686.1 3706015..3706752(+) (comL) [Escherichia coli strain A41]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376