Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VF_RS04895 Genome accession   NC_006840
Coordinates   1033510..1034940 (+) Length   476 a.a.
NCBI ID   WP_011261589.1    Uniprot ID   Q5E6B4
Organism   Aliivibrio fischeri ES114     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028510..1039940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS04870 (VF0934) rsxB 1029195..1029779 (-) 585 WP_005418571.1 electron transport complex subunit RsxB -
  VF_RS04875 (VF0935) rsxA 1029782..1030363 (-) 582 WP_005418573.1 electron transport complex subunit RsxA -
  VF_RS04890 (VF0936) uvrB 1031186..1033216 (+) 2031 WP_011261588.1 excinuclease ABC subunit UvrB Machinery gene
  VF_RS04895 (VF0937) luxO 1033510..1034940 (+) 1431 WP_011261589.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VF_RS04900 (VF0938) - 1034951..1035286 (+) 336 WP_233909801.1 Hpt domain-containing protein -
  VF_RS04905 (VF0939) yvcK 1035275..1036153 (-) 879 WP_005418582.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VF_RS04910 (VF0940) moaA 1036536..1037525 (+) 990 WP_005418584.1 GTP 3',8-cyclase MoaA -
  VF_RS04915 (VF0941) moaC 1037538..1038017 (+) 480 WP_005418586.1 cyclic pyranopterin monophosphate synthase MoaC -
  VF_RS04920 (VF0942) moaD 1038014..1038259 (+) 246 WP_005418589.1 molybdopterin synthase sulfur carrier subunit -
  VF_RS04925 (VF0943) moaE 1038261..1038707 (+) 447 WP_005418591.1 molybdopterin synthase catalytic subunit MoaE -
  VF_RS04930 (VF0944) - 1038813..1039778 (-) 966 WP_011261591.1 alpha-L-glutamate ligase-like protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 52909.40 Da        Isoelectric Point: 5.5470

>NTDB_id=24558 VF_RS04895 WP_011261589.1 1033510..1034940(+) (luxO) [Aliivibrio fischeri ES114]
MIQKKYLLMVEDTASVAALYRSYLNPLGFDIDVVAKGVEAIEKIKLRTPDLVLLDLRLPDMTGFDVLAEIRKDNQSIPVV
LMTAHGSIDAAVEAMQLGAQDFLIKPCEADRLRVTVNNALRRAQKDQKEFQENPKDTNKQYQGFIGSSSQMHQVYRTIDS
AAPSKATVFITGESGTGKEVCAEAIHAASKRGDGPFIAINCAAIPKDLIESELFGHVKGAFTGASVDRKGAAEQADGGTL
FLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMSRVDVRFVCATNRDPWLEVQAGRFREDLYYRLHVIPLTLPPLRDRGN
DIIEIGHSILGHFSHEEGREFITFSPEVVDRFLNYDWPGNVRQLQNVIRNVVVLNKGKEVELSMLPPPLSLDSKSGVNIA
SNVSISDSTKPTESILPSNRILDSKDQETIIPLWQSEKQIIENAIELCGGNIPQAAKQLEVSPSTIYRKLQSWNER

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=24558 VF_RS04895 WP_011261589.1 1033510..1034940(+) (luxO) [Aliivibrio fischeri ES114]
ATGATACAAAAAAAATATTTATTAATGGTAGAAGATACTGCTTCCGTTGCTGCGTTATATCGCTCTTATTTAAACCCGTT
AGGTTTTGATATTGATGTCGTAGCTAAAGGTGTTGAAGCCATTGAGAAAATCAAATTAAGAACCCCTGATCTTGTGTTAC
TAGATTTGCGCCTGCCTGACATGACAGGTTTTGATGTGTTGGCTGAAATTCGTAAAGATAACCAAAGTATTCCTGTTGTA
TTAATGACGGCTCATGGCTCAATTGATGCTGCAGTAGAAGCCATGCAGTTAGGGGCTCAAGATTTCTTAATCAAACCATG
TGAAGCTGACCGTTTGAGGGTTACGGTAAATAACGCATTACGACGTGCACAAAAAGATCAGAAAGAATTCCAAGAGAATC
CAAAAGATACCAATAAACAGTATCAAGGATTTATTGGTAGTAGCTCTCAAATGCATCAGGTTTATCGCACCATAGATTCC
GCCGCACCAAGTAAAGCCACGGTATTTATTACTGGTGAATCGGGGACGGGTAAAGAGGTGTGTGCTGAAGCCATTCATGC
GGCTAGTAAGCGTGGAGACGGGCCTTTCATCGCTATTAACTGTGCGGCAATTCCAAAAGATTTAATTGAAAGTGAGCTTT
TTGGTCACGTTAAAGGCGCATTTACAGGTGCCTCTGTTGATCGAAAAGGTGCTGCCGAACAAGCAGATGGAGGTACGCTT
TTCCTCGATGAATTATGTGAAATGGATTTGGATTTACAGACCAAATTATTGCGATTTATTCAAACTGGTACTTTTCAAAA
AGTTGGTTCTTCTAAAATGAGCCGAGTTGATGTTCGATTTGTTTGTGCTACAAACCGAGACCCTTGGCTAGAAGTACAAG
CAGGCCGATTTAGAGAGGATTTATATTATCGTTTACATGTTATTCCTCTAACATTACCTCCTCTAAGAGACAGAGGAAAT
GATATTATTGAAATTGGTCACTCAATCCTTGGGCATTTTTCTCACGAGGAAGGTCGTGAGTTTATTACATTTAGTCCTGA
GGTTGTGGATAGGTTTTTGAATTACGATTGGCCTGGAAACGTACGACAATTACAAAATGTGATTAGGAATGTAGTCGTAT
TAAATAAAGGAAAAGAAGTCGAATTATCCATGCTGCCCCCTCCATTATCATTAGATAGTAAGAGTGGTGTAAATATTGCA
TCTAATGTATCCATAAGCGATTCAACTAAGCCTACAGAATCTATTCTGCCTAGTAATAGGATCTTAGATAGTAAAGATCA
AGAAACTATTATTCCGTTATGGCAATCTGAAAAACAGATCATTGAAAACGCAATTGAACTATGTGGTGGGAACATTCCAC
AAGCCGCTAAGCAATTAGAGGTTAGTCCTTCTACAATATATAGAAAACTACAGTCTTGGAATGAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(433-471)

Sigma-54 interaction domain (Sigma54_activat)

(145-310)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E6B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

69.723

98.529

0.687

Multiple sequence alignment