Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CLD04_RS18425 Genome accession   NZ_CP023257
Coordinates   3477711..3478400 (-) Length   229 a.a.
NCBI ID   WP_095843980.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3472711..3483400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS18390 (CLD04_18390) flgN 3472892..3473374 (-) 483 WP_003227999.1 flagellar protein FlgN -
  CLD04_RS18395 (CLD04_18395) flgM 3473390..3473656 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  CLD04_RS18400 (CLD04_18400) yvyF 3473737..3474156 (-) 420 WP_095843978.1 TIGR03826 family flagellar region protein -
  CLD04_RS18405 (CLD04_18405) comFC 3474230..3474952 (-) 723 WP_141556157.1 comF operon protein ComFC Machinery gene
  CLD04_RS18410 (CLD04_18410) comFB 3474916..3475211 (-) 296 Protein_3583 late competence protein ComFB -
  CLD04_RS18415 (CLD04_18415) comFA 3475271..3476662 (-) 1392 WP_095843979.1 ATP-dependent helicase ComFA Machinery gene
  CLD04_RS18420 (CLD04_18420) fakBA 3476768..3477613 (-) 846 WP_003244125.1 DegV family protein -
  CLD04_RS18425 (CLD04_18425) degU 3477711..3478400 (-) 690 WP_095843980.1 two-component system response regulator DegU Regulator
  CLD04_RS18430 (CLD04_18430) degS 3478483..3479640 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CLD04_RS18435 (CLD04_18435) yvyE 3479857..3480510 (+) 654 WP_003227979.1 YigZ family protein -
  CLD04_RS18440 (CLD04_18440) tagV 3480510..3481676 (+) 1167 WP_019712707.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  CLD04_RS18445 (CLD04_18445) tagO 3481749..3482825 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25882.61 Da        Isoelectric Point: 5.9446

>NTDB_id=245576 CLD04_RS18425 WP_095843980.1 3477711..3478400(-) (degU) [Bacillus subtilis strain TLO3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYLEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=245576 CLD04_RS18425 WP_095843980.1 3477711..3478400(-) (degU) [Bacillus subtilis strain TLO3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCTTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment