Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CLD04_RS18415 Genome accession   NZ_CP023257
Coordinates   3475271..3476662 (-) Length   463 a.a.
NCBI ID   WP_095843979.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470271..3481662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS18380 (CLD04_18380) flgL 3470443..3471339 (-) 897 WP_095843976.1 flagellar hook-associated protein FlgL -
  CLD04_RS18385 (CLD04_18385) flgK 3471350..3472873 (-) 1524 WP_095843977.1 flagellar hook-associated protein FlgK -
  CLD04_RS18390 (CLD04_18390) flgN 3472892..3473374 (-) 483 WP_003227999.1 flagellar protein FlgN -
  CLD04_RS18395 (CLD04_18395) flgM 3473390..3473656 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  CLD04_RS18400 (CLD04_18400) yvyF 3473737..3474156 (-) 420 WP_095843978.1 TIGR03826 family flagellar region protein -
  CLD04_RS18405 (CLD04_18405) comFC 3474230..3474952 (-) 723 WP_141556157.1 comF operon protein ComFC Machinery gene
  CLD04_RS18410 (CLD04_18410) comFB 3474916..3475211 (-) 296 Protein_3583 late competence protein ComFB -
  CLD04_RS18415 (CLD04_18415) comFA 3475271..3476662 (-) 1392 WP_095843979.1 ATP-dependent helicase ComFA Machinery gene
  CLD04_RS18420 (CLD04_18420) fakBA 3476768..3477613 (-) 846 WP_003244125.1 DegV family protein -
  CLD04_RS18425 (CLD04_18425) degU 3477711..3478400 (-) 690 WP_095843980.1 two-component system response regulator DegU Regulator
  CLD04_RS18430 (CLD04_18430) degS 3478483..3479640 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  CLD04_RS18435 (CLD04_18435) yvyE 3479857..3480510 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52575.67 Da        Isoelectric Point: 10.0082

>NTDB_id=245575 CLD04_RS18415 WP_095843979.1 3475271..3476662(-) (comFA) [Bacillus subtilis strain TLO3]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=245575 CLD04_RS18415 WP_095843979.1 3475271..3476662(-) (comFA) [Bacillus subtilis strain TLO3]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTACACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTTA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.784

100

0.998

Multiple sequence alignment