Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY95_RS05960 Genome accession   NZ_CP028734
Coordinates   1234032..1234769 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A42     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229032..1239769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY95_RS05930 (AOY95_06225) yfiL 1229191..1229556 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  AOY95_RS05935 (AOY95_06230) aroF 1229766..1230836 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY95_RS05940 (AOY95_06235) tyrA 1230847..1231968 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY95_RS05945 (AOY95_06240) pheA 1232011..1233171 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY95_RS05950 (AOY95_06245) pheL 1233270..1233317 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY95_RS05955 (AOY95_06250) raiA 1233421..1233762 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY95_RS05960 (AOY95_06260) comL 1234032..1234769 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY95_RS05965 (AOY95_06265) rluD 1234904..1235884 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY95_RS05970 (AOY95_06270) yfiH 1235881..1236612 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  AOY95_RS05975 (AOY95_06275) clpC 1236742..1239315 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=245482 AOY95_RS05960 WP_000197686.1 1234032..1234769(-) (comL) [Escherichia coli strain A42]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=245482 AOY95_RS05960 WP_000197686.1 1234032..1234769(-) (comL) [Escherichia coli strain A42]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376