Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   VF_RS02245 Genome accession   NC_006840
Coordinates   467063..469057 (+) Length   664 a.a.
NCBI ID   WP_011261222.1    Uniprot ID   Q5E7R1
Organism   Aliivibrio fischeri ES114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462063..474057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS02220 (VF0435) gshB 462316..463263 (-) 948 WP_011261218.1 glutathione synthase -
  VF_RS02225 (VF0436) rsmE 463277..464008 (-) 732 WP_011261219.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  VF_RS02230 (VF0437) dns 464082..464786 (-) 705 WP_011261220.1 endonuclease Auxiliary factor
  VF_RS02235 (VF0438) - 464878..465378 (-) 501 WP_011261221.1 SprT family zinc-dependent metalloprotease -
  VF_RS02240 (VF0439) metK 465544..466698 (-) 1155 WP_005417583.1 methionine adenosyltransferase -
  VF_RS02245 (VF0440) recP/tkt 467063..469057 (+) 1995 WP_011261222.1 transketolase Machinery gene
  VF_RS02250 (VF0441) epd 469202..470221 (+) 1020 WP_011261223.1 erythrose-4-phosphate dehydrogenase -
  VF_RS02255 (VF0442) - 470388..471551 (+) 1164 WP_011261224.1 phosphoglycerate kinase -
  VF_RS02260 (VF0443) fbaA 471707..472783 (+) 1077 WP_005417587.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71805.72 Da        Isoelectric Point: 4.7208

>NTDB_id=24541 VF_RS02245 WP_011261222.1 467063..469057(+) (recP/tkt) [Aliivibrio fischeri ES114]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPQNPEWADRDRFILSNGHGSMLIYSLLHLSGY
DLSIEDLKNFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNGVGMAMAEKALAAQFNREGHDIVDHNTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGEVEGWFSDDTPKRFEAYGWHVIPAVDGHDSDAINAAIEAAKADPRPSLI
CTKTVIGFGSPNKQGTHDCHGAPLGAEEIAATKAQLGWEYGAFDIPADVYAGWDAKEVGAEKEAAWNAKFDAYAAAHPEL
AAEYKRRVNGDLPAEWEEKANTIIADLQANPANIASRKASQNALEAFGAMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQIA
SLRLTPNMSTWRPCDQVESAVAWKLAIERKDGPSSLIFSRQNLAQQERTQEQVADIAKGAYILKDCEGQPELILIATGSE
VELAVEAAAQLTAEGKAVRVVSMPSTDAFDKQDEGYREAVFPSAVTKRIAIEAGIADFWYKYVGFGGKIIGMTTFGESAP
ADELFKMFGFTTENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=24541 VF_RS02245 WP_011261222.1 467063..469057(+) (recP/tkt) [Aliivibrio fischeri ES114]
ATGTCTTCACGTAAACATCTAGCAAATGCAATCCGCGCTTTAAGCATGGATGGTGTTCAACAAGCAAATTCTGGTCACCC
AGGCGCACCTATGGGTATGGCAGATATCGCTGAAGTATTATGGCGTAGCCACCTAAATCACAACCCACAAAATCCAGAGT
GGGCTGACCGCGACCGTTTCATTCTTTCAAACGGCCATGGCTCTATGCTGATTTATTCTCTGCTTCATCTTTCAGGTTAT
GACCTGTCTATCGAAGACTTAAAGAATTTCCGTCAACTGCATTCTAAAACTCCAGGTCACCCTGAGTACGGTTATGCACC
AGGCGTAGAAACAACTACGGGTCCATTAGGTCAAGGCATCACTAACGGTGTTGGTATGGCGATGGCTGAAAAAGCATTAG
CGGCACAATTTAACCGTGAAGGCCACGATATCGTTGATCACAACACATACGTGTTCATGGGTGACGGTTGTCTAATGGAA
GGTATCTCTCACGAAGCGTGTTCACTTGCTGGTACATTAGGTCTAGGCAAATTAATCGCATTTTGGGATGACAACGGTAT
CTCTATCGATGGTGAAGTTGAAGGTTGGTTCTCTGATGACACGCCTAAACGCTTTGAAGCTTACGGCTGGCACGTAATTC
CTGCTGTTGATGGTCACGATTCAGACGCTATCAATGCAGCAATTGAAGCGGCTAAAGCTGACCCTCGTCCTTCTTTAATT
TGTACTAAAACAGTAATTGGTTTTGGCTCTCCAAATAAACAAGGTACACACGACTGTCACGGCGCTCCATTAGGTGCTGA
AGAAATTGCAGCAACTAAAGCTCAATTAGGTTGGGAATACGGTGCATTTGATATCCCTGCTGACGTATATGCAGGCTGGG
ATGCAAAAGAAGTTGGTGCTGAAAAAGAAGCAGCTTGGAATGCGAAATTTGACGCATACGCAGCAGCACACCCTGAATTA
GCAGCTGAATATAAACGCCGCGTAAATGGTGATTTACCTGCGGAGTGGGAAGAAAAAGCAAATACAATCATTGCTGATCT
TCAAGCAAATCCTGCAAATATCGCTTCTCGTAAAGCATCTCAAAACGCATTAGAAGCGTTTGGTGCTATGCTACCTGAAT
TCATGGGCGGCTCTGCTGACCTTGCACCATCTAACTTAACGATGTGGTCGGGTTCTAAATCTTTAGAAGCAAATGACTTC
TCTGGTAACTACATTCACTACGGTGTGCGTGAATTTGGTATGACAGCAATCATGAATGGTATTGCTTTGCACGGTGGTTT
CGTACCATACGGCGCAACGTTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCACTAATGAAAGTGC
AAAACATTCAAGTTTACACGCATGACTCTATCGGTCTTGGCGAAGATGGTCCAACTCACCAACCAGTTGAGCAAATCGCT
TCTCTACGTCTAACTCCTAACATGAGCACATGGCGTCCATGTGATCAAGTTGAGTCTGCTGTAGCATGGAAATTGGCTAT
CGAGCGTAAAGATGGTCCTTCTTCTTTAATCTTCTCTCGTCAAAACCTTGCACAGCAAGAGCGTACACAAGAGCAAGTTG
CAGATATCGCTAAAGGTGCATACATCCTTAAGGATTGTGAGGGCCAACCTGAGTTGATCCTTATTGCAACGGGTTCAGAA
GTTGAGCTAGCAGTTGAAGCTGCAGCGCAATTGACAGCAGAAGGTAAAGCGGTACGTGTTGTTTCAATGCCATCAACCGA
TGCATTTGATAAGCAAGACGAAGGATACCGTGAAGCAGTATTTCCATCAGCGGTAACTAAACGTATCGCAATTGAAGCGG
GTATTGCTGATTTCTGGTACAAGTATGTTGGTTTTGGTGGCAAGATCATCGGCATGACAACATTTGGTGAGTCAGCGCCT
GCTGATGAGCTATTCAAAATGTTTGGTTTCACTACTGAAAATGTAGTAAACACGGCGAAAGAACTTTTAGCTTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(544-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E7R1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.25

98.946

0.477

Multiple sequence alignment